Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 0.0e+00 1216.1 615 100.0
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.7e-215 753.1 637 64.5
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.5e-214 750.0 632 63.8
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.3e-214 748.8 632 63.6
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.9e-210 735.7 633 63.2
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 2.1e-208 729.6 630 64.0
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 1.8e-183 646.7 688 53.8
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.0e-162 577.8 641 53.0
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 6.1e-160 568.5 630 52.5
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.7e-155 551.6 638 50.2
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 5.0e-154 548.9 640 50.2
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.5e-153 546.6 637 49.6
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 5.5e-153 545.4 636 50.0
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 4.7e-152 542.3 639 49.8
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.0e-151 539.7 662 48.0
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 3.0e-151 539.7 645 50.7
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.0e-150 537.0 640 50.9
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 6.3e-149 531.9 644 48.6
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 2.0e-147 526.9 637 48.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.9e-146 523.1 634 50.0
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 4.7e-144 515.8 637 48.0
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 3.9e-143 512.7 636 48.6
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 2.0e-142 510.4 635 49.0
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 2.6e-142 510.0 644 47.4
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 5.3e-140 502.3 643 47.7
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 2.2e-138 496.9 638 48.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 6.5e-138 495.4 647 47.1
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 5.5e-137 492.3 633 48.0
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.2e-136 491.1 639 46.5
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.3e-135 486.9 649 46.1
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.5e-134 484.2 637 47.4
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.6e-134 483.4 642 47.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.3e-134 483.0 635 48.2
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 2.2e-133 480.3 689 43.7
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.2e-133 478.4 635 47.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 7.0e-132 475.3 643 45.9
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 9.1e-132 474.9 638 46.2
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.2e-131 474.6 642 46.7
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.6e-131 474.2 635 47.6
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.0e-131 473.8 634 45.6
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.7e-131 473.4 637 46.6
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 2.7e-131 473.4 634 45.1
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 1.0e-130 471.5 634 44.6
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.7e-130 470.7 659 44.9
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.7e-130 470.7 643 45.6
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 6.5e-130 468.8 629 45.2
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.9e-129 467.2 636 45.9
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.2e-129 466.5 636 45.9
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 5.5e-129 465.7 507 54.8
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.6e-128 464.2 646 44.9
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 1.6e-128 464.2 625 44.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 2.7e-128 463.4 646 45.8
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 4.7e-128 462.6 655 45.0
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.8e-127 460.7 644 46.0
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.8e-127 460.7 640 45.9
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 2.3e-127 460.3 623 44.9
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 4.0e-127 459.5 631 44.7
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.5e-126 457.6 665 42.4
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 5.7e-126 455.7 631 44.4
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 2.2e-125 453.8 630 44.1
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 8.3e-125 451.8 632 44.6
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.7e-123 446.8 642 44.7
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 7.7e-123 445.3 642 44.2
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.7e-122 444.1 637 43.2
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 2.3e-122 443.7 630 43.5
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 6.6e-122 442.2 635 42.7
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.9e-121 440.7 599 44.2
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 3.3e-121 439.9 645 43.4
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 5.5e-121 439.1 630 45.1
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 7.2e-121 438.7 612 43.3
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 2.1e-120 437.2 618 45.5
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.8e-120 436.8 632 42.9
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.6e-120 436.4 651 42.9
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.3e-119 433.7 650 41.8
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 3.0e-119 433.3 634 43.7
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 4.0e-119 433.0 633 42.2
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 8.9e-119 431.8 645 42.0
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.2e-118 431.4 630 43.3
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 4.4e-118 429.5 651 43.9
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 3.7e-117 426.4 642 44.7
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 4.9e-117 426.0 632 44.6
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 6.3e-117 425.6 636 44.7
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 8.3e-117 425.2 650 44.0
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-116 424.9 632 42.7
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.4e-116 424.5 649 42.1
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.0e-115 420.6 627 44.0
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.0e-115 420.6 650 41.4
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.7e-115 420.2 650 43.7
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 3.5e-115 419.9 630 42.1
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.0e-114 418.3 609 42.4
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.3e-114 417.9 623 42.1
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.3e-113 413.3 627 41.3
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 7.3e-113 412.1 627 41.6
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 9.5e-113 411.8 645 41.2
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.6e-112 411.0 636 40.9
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.1e-112 409.1 632 41.8
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 5.2e-111 406.0 656 41.6
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.2e-110 404.8 663 40.6
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.6e-110 403.7 665 40.6
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.6e-110 403.7 506 48.8
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 4.4e-110 402.9 644 39.9
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 4.4e-110 402.9 642 39.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 1.3e-109 401.4 634 39.9
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.9e-108 397.5 609 40.7
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 7.0e-108 395.6 670 40.4
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.7e-107 393.7 394 55.1
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 7.8e-107 392.1 594 42.9
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 6.6e-106 389.0 639 39.4
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 1.1e-105 388.3 639 39.4
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.9e-105 387.5 569 43.9
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 4.3e-105 386.3 632 38.9
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 9.5e-105 385.2 633 39.5
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 4.7e-104 382.9 633 41.2
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 4.0e-103 379.8 632 39.7
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.3e-101 374.8 640 38.1
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 3.7e-101 373.2 616 41.4
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 1.4e-100 371.3 608 39.5
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 2.4e-100 370.5 608 39.6
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 6.0e-99 365.9 610 39.5
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.7e-98 364.4 633 38.4
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 3.9e-98 363.2 610 39.5
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 5.6e-97 359.4 545 40.6
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 8.1e-96 355.5 414 51.0
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.0e-94 350.9 635 39.2
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.5e-94 349.0 499 46.9
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 6.4e-93 345.9 602 38.2
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 9.9e-86 322.0 327 54.7
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.7e-82 311.2 382 52.1
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.6e-81 305.4 321 52.0
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 4.4e-78 296.6 597 36.3
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 5.4e-76 289.7 250 56.4
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 9.3e-76 288.9 570 37.2
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.5e-75 287.0 376 47.3
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 5.1e-74 283.1 269 55.0
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.0e-70 271.2 245 57.1
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 4.2e-68 263.5 688 31.5
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.4e-62 243.8 385 42.1
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 9.9e-62 242.3 397 40.8
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 2.5e-60 237.7 447 35.3
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 9.3e-60 235.7 253 53.0
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 4.3e-57 226.9 433 34.6
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 7.4e-57 226.1 642 31.5
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.4e-55 221.9 465 36.3
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.0e-53 215.7 431 38.3
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.8e-48 197.6 407 39.6
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.4e-47 194.5 204 48.5
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 8.5e-45 186.0 577 29.5
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.1e-39 167.2 232 43.1
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.9e-37 161.0 177 49.2
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.4e-36 158.7 260 46.2
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 7.4e-33 146.4 256 42.6
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 3.1e-31 141.0 454 26.9
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.7e-29 135.2 95 70.5
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 7.4e-25 119.8 287 33.8
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.2e-24 118.2 219 38.8
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 9.1e-23 112.8 261 37.5
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 4.5e-22 110.5 120 48.3
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-18 97.8 260 31.5
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 5.2e-18 97.1 255 32.2
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.2e-17 95.9 256 33.6
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.8e-16 91.3 204 39.7
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 8.3e-16 89.7 243 34.2
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 3.1e-15 87.8 83 53.0
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.5e-12 78.2 147 34.7
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-11 75.1 149 36.2
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.3e-10 71.6 95 44.2
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 8.8e-10 69.7 71 45.1
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 2.0e-09 68.6 89 42.7
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.8e-07 62.0 73 56.2


User provided reference genes

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