Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 7.3e-195 683.7 346 100.0
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 7.7e-128 461.1 352 67.9
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 3.7e-122 442.2 353 66.0
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 3.4e-120 435.6 351 66.7
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 8.8e-116 421.0 349 62.8
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 3.2e-110 402.5 362 59.9
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 3.2e-110 402.5 363 60.1
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 3.3e-107 392.5 350 61.4
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 4.4e-107 392.1 360 60.8
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.2e-106 389.8 353 62.9
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.8e-106 389.4 352 61.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 4.1e-105 385.6 356 59.6
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.0e-104 383.3 357 59.7
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.3e-103 380.6 356 59.8
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 5.0e-103 378.6 366 56.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 8.5e-103 377.9 285 66.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.9e-102 376.7 355 57.7
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 5.2e-100 368.6 347 57.3
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.1e-97 360.9 358 55.0
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.1e-97 360.9 358 55.0
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.1e-97 359.0 362 54.1
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 7.0e-97 358.2 370 52.7
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 9.1e-97 357.8 355 55.8
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.7e-96 356.3 359 53.8
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.5e-96 355.5 366 53.8
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 5.9e-96 355.1 355 55.8
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.1e-94 350.9 354 51.4
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.1e-94 350.9 358 52.8
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.5e-94 350.5 373 53.9
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.5e-94 349.7 370 52.7
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 3.3e-94 349.4 351 53.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.3e-94 349.4 357 54.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.7e-93 345.5 358 53.4
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.7e-93 345.5 356 53.4
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.0e-92 342.8 358 53.1
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.5e-91 340.5 362 52.5
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.6e-91 339.7 377 50.7
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 4.4e-91 339.0 361 52.1
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 6.3e-90 335.1 350 54.0
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 8.3e-90 334.7 358 51.1
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 3.1e-89 332.8 371 51.2
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 3.1e-89 332.8 371 51.2
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.4e-89 332.0 352 52.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 9.2e-89 331.3 361 52.4
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 9.2e-89 331.3 350 51.7
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.7e-88 329.7 367 50.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 5.9e-88 328.6 359 53.2
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 6.6e-87 325.1 363 51.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 6.6e-87 325.1 356 48.3
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.5e-86 323.9 368 50.0
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.5e-86 323.2 365 50.7
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 3.3e-86 322.8 365 51.0
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 4.3e-86 322.4 364 51.9
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 4.3e-86 322.4 365 50.4
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 4.3e-86 322.4 358 50.3
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 7.3e-86 321.6 363 49.9
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 7.3e-86 321.6 361 50.7
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 7.3e-86 321.6 372 49.7
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 3.6e-85 319.3 356 48.3
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 4.7e-85 318.9 358 48.6
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.0e-84 317.8 365 49.0
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-84 317.0 365 48.8
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 3.0e-84 316.2 266 57.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 4.0e-84 315.8 347 48.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 4.0e-84 315.8 365 49.9
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.0e-83 313.5 362 48.9
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 7.5e-83 311.6 362 50.0
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 7.5e-83 311.6 351 49.9
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 7.5e-83 311.6 363 48.8
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.7e-82 310.5 355 50.7
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 8.3e-82 308.1 335 52.8
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 8.3e-82 308.1 353 49.3
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.1e-81 307.8 360 49.4
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.4e-81 307.4 365 47.7
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.9e-81 307.0 366 48.9
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.2e-81 306.2 353 47.9
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 7.0e-81 305.1 365 50.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 9.2e-81 304.7 345 49.9
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.2e-80 304.3 356 47.8
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.2e-80 304.3 366 48.9
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.0e-80 303.5 371 47.2
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.7e-80 303.1 358 48.0
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.7e-80 303.1 350 46.6
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 6.0e-80 302.0 346 46.8
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 7.8e-80 301.6 358 47.2
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.3e-79 300.8 341 49.0
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.7e-79 300.4 343 47.2
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.0e-79 299.7 263 55.5
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 5.0e-79 298.9 362 47.5
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 8.6e-79 298.1 277 54.9
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.5e-78 297.4 344 45.9
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.9e-78 297.0 307 58.3
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.3e-78 296.2 396 43.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.6e-78 295.4 310 50.0
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 7.3e-78 295.0 343 46.4
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 7.3e-78 295.0 353 46.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 3.6e-77 292.7 345 45.2
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.6e-77 292.7 398 43.5
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.6e-77 292.7 398 43.5
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.6e-77 292.7 348 48.0
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 6.2e-77 292.0 348 46.8
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 8.0e-77 291.6 359 47.9
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.4e-76 290.8 349 45.3
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.4e-76 290.8 367 45.8
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.8e-76 290.4 349 45.8
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.8e-76 290.4 348 49.4
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.8e-76 290.4 400 44.2
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 2.3e-76 290.0 344 46.8
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 4.0e-76 289.3 346 45.7
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 6.8e-76 288.5 350 45.1
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 8.9e-76 288.1 355 45.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.5e-75 287.3 341 46.3
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.0e-75 287.0 353 45.3
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.6e-75 286.6 347 47.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 3.4e-75 286.2 343 45.5
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 7.5e-75 285.0 341 46.0
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.9e-74 283.1 349 43.6
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.9e-74 283.1 275 53.8
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.9e-74 282.3 287 50.9
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 3.2e-73 279.6 252 54.0
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.2e-72 277.7 319 51.1
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 4.6e-72 275.8 357 46.5
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.0e-71 274.6 265 51.3
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.3e-71 274.2 322 46.0
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.6e-71 271.9 347 50.4
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 6.6e-71 271.9 283 49.5
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 6.6e-71 271.9 283 49.5
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 4.3e-70 269.2 283 49.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.1e-69 266.9 280 48.6
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.6e-69 266.2 355 45.9
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 8.1e-69 265.0 253 52.6
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 2.2e-66 256.9 291 48.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.9e-66 256.5 308 46.4
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 3.7e-66 256.1 263 51.0
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 5.4e-65 252.3 237 55.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.1e-63 245.7 315 43.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.5e-62 244.2 305 44.6
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.6e-61 240.7 365 39.2
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.8e-60 237.3 356 42.4
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.5e-59 234.2 310 44.2
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.7e-58 230.7 226 50.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.0e-55 221.5 233 51.9
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.4e-52 211.1 425 34.8
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.0e-51 207.2 260 45.8
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 7.6e-51 205.3 196 62.8
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.3e-50 204.5 215 48.4
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.9e-50 203.4 310 39.4
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 8.4e-50 201.8 327 38.5
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 4.6e-48 196.1 347 36.3
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.7e-47 194.1 318 38.4
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.1e-44 184.9 184 52.2
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 4.2e-41 172.9 214 47.2
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 2.1e-37 160.6 117 62.4
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 5.3e-36 156.0 243 39.5
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.2e-35 154.8 213 40.4
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 5.5e-33 146.0 448 27.0
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 6.0e-32 142.5 160 49.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 5.6e-30 136.0 171 46.8
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 3.7e-29 133.3 279 31.2
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.8e-29 132.9 151 50.3
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 7.6e-27 125.6 159 45.9
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.9e-23 113.2 125 50.4
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 5.1e-23 112.8 283 30.7
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.5e-22 111.3 82 62.2
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.6e-21 107.8 112 50.0
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.6e-21 107.8 109 49.5
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.8e-20 104.4 131 45.0
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 4.3e-14 83.2 76 51.3
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.7e-13 81.3 106 39.6
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 2.2e-13 80.9 79 53.2
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 4.8e-13 79.7 142 31.7
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.8e-13 79.7 71 49.3
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.8e-12 77.8 127 44.9
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.1e-12 77.0 101 44.6
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.0e-11 74.3 152 35.5
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 2.2e-10 70.9 116 33.6
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 5.5e-09 66.2 53 52.8
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 2.1e-08 64.3 54 50.0
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 2.6e-06 57.4 50 52.0


User provided reference genes

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