Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00478 Erythranthe guttata HOM05D007206 ORTHO05D009176 1.6e-103 379.4 183 100.0
SalBow3G1834 Salvia bowleyana HOM05D007206 ORTHO05D009176 5.6e-69 264.6 175 70.9
SGA_v2.0_scaffold657G53380 Striga asiatica HOM05D007206 ORTHO05D009176 7.5e-66 254.2 170 70.6
Oeu017000.1 Olea europaea HOM05D007206 ORTHO05D009176 1.2e-63 246.9 171 69.0
Cc06_g04800 Coffea canephora HOM05D007206 ORTHO05D009176 1.3e-62 243.4 175 62.9
DCAR_017648 Daucus carota HOM05D007206 ORTHO05D009176 1.4e-59 233.4 160 66.9
CsaV3_3G036450 Cucumis sativus L. HOM05D007206 ORTHO05D009176 6.8e-59 231.1 165 64.2
PGSC0003DMG400012983 Solanum tuberosum HOM05D007206 ORTHO05D009176 1.2e-58 230.3 173 64.2
ECA233G5177 Erigeron canadensis HOM05D007206 ORTHO05D009176 1.5e-58 229.9 182 58.2
MELO3C009409.2 Cucumis melo HOM05D007206 ORTHO05D009176 2.0e-58 229.6 165 63.6
Sopen01g017760 Solanum pennellii HOM05D007206 ORTHO05D009176 2.0e-58 229.6 173 63.6
Solyc09g008590.4 Solanum lycopersicum HOM05D007206 ORTHO05D009176 3.4e-58 228.8 165 64.8
Hma1.2p1_0564F.1_g179170 Hydrangea macrophylla HOM05D007206 ORTHO05D009176 1.3e-57 226.9 175 59.4
ClCG10G019630 Citrullus lanatus HOM05D007206 ORTHO05D009176 1.4e-56 223.4 163 62.6
QL07p041366 Quercus lobata HOM05D007206 ORTHO05D009176 9.2e-56 220.7 165 59.4
Hund01087 Selenicereus undatus HOM05D007206 ORTHO05D009176 1.2e-55 220.3 158 61.4
CiPaw.09G005300 Carya illinoinensis HOM05D007206 ORTHO05D009176 1.6e-55 219.9 160 59.4
Haze_19480 Corylus avellana HOM05D007206 ORTHO05D009176 1.6e-55 219.9 157 60.5
CAN.G1759.3 Capsicum annuum HOM05D007206 ORTHO05D009176 3.5e-55 218.8 152 68.4
Actinidia32469 Actinidia chinensis HOM05D007206 ORTHO05D009176 1.3e-54 216.9 155 61.9
HanXRQChr13g0400551 Helianthus annuus HOM05D007206 ORTHO05D009176 3.0e-54 215.7 182 53.8
Lsat_1_v5_gn_6_28201 Lactuca sativa HOM05D007206 ORTHO05D009176 6.6e-54 214.5 168 58.9
Lj1g0012469 Lotus japonicus HOM05D007206 ORTHO05D009176 2.5e-53 212.6 178 55.1
MD14G1096900 Malus domestica HOM05D007206 ORTHO05D009176 4.3e-53 211.8 141 66.7
FvH4_6g17250 Fragaria vesca HOM05D007206 ORTHO05D009176 7.3e-53 211.1 163 62.0
Potri.006G119100 Populus trichocarpa HOM05D007206 ORTHO05D009176 7.3e-53 211.1 168 58.9
RcHm_v2.0_Chr3g0471351 Rosa chinensis HOM05D007206 ORTHO05D009176 7.3e-53 211.1 158 60.8
Sed0016601 Sechium edule HOM05D007206 ORTHO05D009176 7.3e-53 211.1 165 59.4
FAN05G5006 Fragaria x ananassa HOM05D007206 ORTHO05D009176 9.5e-53 210.7 177 58.2
FAN05G2314 Fragaria x ananassa HOM05D007206 ORTHO05D009176 1.6e-52 209.9 177 58.2
TWI77G0103 Tripterygium wilfordii HOM05D007206 ORTHO05D009176 1.6e-52 209.9 171 55.0
Lalb_Chr25g0288781 Lupinus albus HOM05D007206 ORTHO05D009176 2.8e-52 209.1 176 54.5
CSS0049694 Camellia sinensis var. sinensis HOM05D007206 ORTHO05D009176 4.7e-52 208.4 133 71.4
FAN14G2195 Fragaria x ananassa HOM05D007206 ORTHO05D009176 6.2e-52 208.0 163 61.3
Glyma.03G188300 Glycine max HOM05D007206 ORTHO05D009176 6.2e-52 208.0 173 57.2
Prupe.7G122800 Prunus persica HOM05D007206 ORTHO05D009176 6.2e-52 208.0 187 55.6
Glyma.19G188400 Glycine max HOM05D007206 ORTHO05D009176 1.4e-51 206.8 161 59.0
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 1.8e-51 206.5 150 60.7
Lj2C124T14 Lonicera japonica HOM05D007206 ORTHO05D009176 2.4e-51 206.1 167 60.5
Manes.09G048990 Manihot esculenta HOM05D007206 ORTHO05D009176 3.1e-51 205.7 156 57.7
VMungo1383G0088 Vigna mungo HOM05D007206 ORTHO05D009176 5.2e-51 204.9 164 56.7
TPR.G31671 Trifolium pratense HOM05D007206 ORTHO05D009176 6.8e-51 204.5 156 59.6
Ca_08938_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.5e-50 203.4 181 54.1
Ca_30111_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.5e-50 203.4 181 54.1
Sabra06G0093700 Salix brachista HOM05D007206 ORTHO05D009176 1.5e-50 203.4 159 57.9
Duzib093G2029 Durio zibethinus HOM05D007206 ORTHO05D009176 3.8e-49 198.7 166 54.2
Gohir.D01G129600 Gossypium hirsutum HOM05D007206 ORTHO05D009176 3.8e-49 198.7 163 55.8
MD12G1102700 Malus domestica HOM05D007206 ORTHO05D009176 3.8e-49 198.7 178 55.1
Phvul.001G183600 Phaseolus vulgaris HOM05D007206 ORTHO05D009176 1.4e-48 196.8 164 54.9
Aqoxy1G01032 Aquilegia oxysepala HOM05D007206 ORTHO05D009176 1.9e-48 196.4 163 55.8
Gorai.002G160400 Gossypium raimondii HOM05D007206 ORTHO05D009176 2.4e-48 196.1 163 55.2
Medtr7g102770 Medicago truncatula HOM05D007206 ORTHO05D009176 2.4e-48 196.1 179 51.4
Eucgr.K02418 Eucalyptus grandis HOM05D007206 ORTHO05D009176 7.1e-48 194.5 159 53.5
Thecc.05G075700 Theobroma cacao HOM05D007206 ORTHO05D009176 2.7e-47 192.6 164 54.3
Cpa.g.sc5.124 Carica papaya HOM05D007206 ORTHO05D009176 3.5e-47 192.2 163 54.0
COL.COLO4_22256 Corchorus olitorius HOM05D007206 ORTHO05D009176 4.6e-47 191.8 173 52.6
Sc02g0001330 Simmondsia chinensis HOM05D007206 ORTHO05D009176 1.0e-46 190.7 177 50.3
ATR0580G453 Amborella trichopoda HOM05D007206 ORTHO05D009176 1.7e-46 189.9 143 58.0
Psat0s4599g0080 Pisum sativum HOM05D007206 ORTHO05D009176 3.0e-46 189.1 143 58.7
Sed0006266 Sechium edule HOM05D007206 ORTHO05D009176 3.0e-46 189.1 162 54.3
MBI18_g24930_MAGBIO Magnolia biondii HOM05D007206 ORTHO05D009176 6.6e-46 188.0 142 57.0
Peaxi162Scf01195g00005 Petunia axillaris HOM05D007206 ORTHO05D009176 1.2e-44 183.7 167 56.3
THA.LOC104826925 Tarenaya hassleriana HOM05D007206 ORTHO05D009176 1.1e-43 180.6 156 53.8
AL3G21200 Arabidopsis lyrata HOM05D007206 ORTHO05D009176 1.4e-43 180.3 158 53.8
PSO063G5977 Papaver somniferum HOM05D007206 ORTHO05D009176 1.4e-43 180.3 163 53.4
AT3G09925 Arabidopsis thaliana HOM05D007206 ORTHO05D009176 6.9e-43 177.9 158 53.8
Carub.0003s0903 Capsella rubella HOM05D007206 ORTHO05D009176 2.6e-42 176.0 160 53.1
Aa31LG3G2410 Aethionema arabicum HOM05D007206 ORTHO05D009176 4.4e-42 175.3 155 51.0
Atru.chr8.1702 Acer truncatum HOM05D007206 ORTHO05D009176 9.9e-42 174.1 166 51.8
Ciclev10006960m.g Citrus clementina HOM05D007206 ORTHO05D009176 9.9e-42 174.1 190 48.9
C03p43430 Brassica napus HOM05D007206 ORTHO05D009176 2.2e-41 172.9 161 51.6
CARHR084450 Cardamine hirsuta HOM05D007206 ORTHO05D009176 2.2e-41 172.9 165 50.3
BcaC01g04253 Brassica carinata HOM05D007206 ORTHO05D009176 2.9e-41 172.6 160 51.9
BolC3t16614H Brassica oleracea HOM05D007206 ORTHO05D009176 2.9e-41 172.6 160 51.9
Thhalv10021649m.g Eutrema salsugineum HOM05D007206 ORTHO05D009176 1.1e-40 170.6 165 49.7
BraA03t12750Z Brassica rapa HOM05D007206 ORTHO05D009176 1.4e-40 170.2 165 49.1
AUR62043339 Chenopodium quinoa HOM05D007206 ORTHO05D009176 1.9e-40 169.9 155 50.3
Sp3g08280 Schrenkiella parvula HOM05D007206 ORTHO05D009176 3.2e-40 169.1 165 49.1
HPP92_008498 Vanilla planifolia HOM05D007206 ORTHO05D009176 5.4e-40 168.3 172 47.7
C05p58110 Brassica napus HOM05D007206 ORTHO05D009176 3.5e-39 165.6 165 48.5
BolC5t34468H Brassica oleracea HOM05D007206 ORTHO05D009176 3.5e-39 165.6 165 48.5
A03p35770 Brassica napus HOM05D007206 ORTHO05D009176 4.6e-39 165.2 161 51.6
EL10Ac9g22544 Beta vulgaris HOM05D007206 ORTHO05D009176 2.3e-38 162.9 158 50.6
BcaB03g11581 Brassica carinata HOM05D007206 ORTHO05D009176 2.3e-38 162.9 165 49.1
AUR62022783 Chenopodium quinoa HOM05D007206 ORTHO05D009176 2.3e-38 162.9 157 48.4
A05p39080 Brassica napus HOM05D007206 ORTHO05D009176 6.6e-38 161.4 165 47.3
BraA05t22700Z Brassica rapa HOM05D007206 ORTHO05D009176 6.6e-38 161.4 165 47.3
Dinv35836 Davidia involucrata HOM05D007206 ORTHO05D009176 1.1e-35 154.1 102 65.7
CANSAT80G1624 Cannabis sativa HOM05D007206 ORTHO05D009176 1.8e-35 153.3 166 46.4
arahy.Tifrunner.gnm1.ann1.A01TPE Arachis hypogaea HOM05D007206 ORTHO05D009176 5.8e-34 148.3 130 53.1
arahy.Tifrunner.gnm1.ann1.06CJ1U Arachis hypogaea HOM05D007206 ORTHO05D009176 7.6e-34 147.9 130 53.1
DCAR_017650 Daucus carota HOM05D007206 ORTHO05D009176 7.4e-29 131.3 159 42.1
BcaC05g29720 Brassica carinata HOM05D007206 ORTHO05D009176 2.8e-28 129.4 148 43.2
PSO339G4243 Papaver somniferum HOM05D007206 ORTHO05D009176 1.8e-27 126.7 168 42.9
PSO063G3127 Papaver somniferum HOM05D007206 ORTHO05D009176 2.0e-26 123.2 167 41.3
FAN09G1747 Fragaria x ananassa HOM05D007206 ORTHO05D022624 6.4e-25 118.2 82 63.4
Zm00001eb022730 Zea mays HOM05D007206 ORTHO05D009176 1.1e-24 117.5 168 39.3
Eucgr.F02194 Eucalyptus grandis HOM05D007206 ORTHO05D009176 5.5e-24 115.2 121 45.5
GSVIVG01033719001 Vitis vinifera HOM05D007206 ORTHO05D009176 1.5e-21 107.1 92 55.4
GSVIVG01033715001 Vitis vinifera HOM05D007206 ORTHO05D009176 5.6e-21 105.1 89 56.2
Lalb_Chr01g0018521 Lupinus albus HOM05D007206 ORTHO05D009176 5.3e-11 72.0 55 58.2
Zm00001eb123470 Zea mays HOM05D005469 ORTHO05D001701 9.0e-11 71.2 105 38.1
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 2.6e-10 69.7 132 34.1
DCAR_024812 Daucus carota HOM05D005469 ORTHO05D001701 1.3e-09 67.4 173 31.2
Os01g0164300 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 1.7e-09 67.0 116 36.2
Lsat_1_v5_gn_2_124301 Lactuca sativa HOM05D005469 ORTHO05D001701 8.5e-09 64.7 171 31.0
Sopen02g022890 Solanum pennellii HOM05D003009 ORTHO05D001701 8.5e-09 64.7 99 34.3
CANSAT56G4151 Cannabis sativa HOM05D005469 ORTHO05D001701 1.1e-08 64.3 170 31.8
FAN01G2198 Fragaria x ananassa HOM05D005469 ORTHO05D001701 1.1e-08 64.3 181 33.7
CSS0028429 Camellia sinensis var. sinensis HOM05D005469 ORTHO05D001701 1.4e-08 63.9 168 33.3
CANSAT56G3078 Cannabis sativa HOM05D005469 ORTHO05D001701 1.9e-08 63.5 170 31.8
COL.COLO4_15412 Corchorus olitorius HOM05D005469 ORTHO05D001701 1.9e-08 63.5 169 30.8
RcHm_v2.0_Chr1g0370791 Rosa chinensis HOM05D005469 ORTHO05D001701 1.9e-08 63.5 183 33.3
PGSC0003DMG400029699 Solanum tuberosum HOM05D003009 ORTHO05D001701 2.5e-08 63.2 99 34.3
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 3.2e-08 62.8 126 32.5
RcHm_v2.0_Chr1g0370801 Rosa chinensis HOM05D005469 ORTHO05D001701 7.2e-08 61.6 148 33.8
FvH4_7g24910 Fragaria vesca HOM05D005469 ORTHO05D001701 9.4e-08 61.2 181 33.1
Os01g0164075 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 1.2e-07 60.8 101 35.6
Lj1C959T17 Lonicera japonica HOM05D005469 ORTHO05D001701 1.6e-07 60.5 164 31.1
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 1.6e-07 60.5 99 33.3
Aqoxy1G01324 Aquilegia oxysepala HOM05D005469 ORTHO05D001701 2.1e-07 60.1 102 36.3
Solyc02g078050.4 Solanum lycopersicum HOM05D003009 ORTHO05D001701 2.1e-07 60.1 99 33.3
Sopen05g031040 Solanum pennellii HOM05D005469 ORTHO05D001701 2.7e-07 59.7 172 31.4
Lsat_1_v5_gn_2_124321 Lactuca sativa HOM05D005469 ORTHO05D001701 4.6e-07 58.9 140 32.1
TAR633G0722 Trochodendron aralioides HOM05D005469 ORTHO05D001701 4.6e-07 58.9 102 36.3
AagrBONN_evm.TU.Sc2ySwM_117.3504 Anthoceros agrestis HOM05D005469 ORTHO05D001701 6.1e-07 58.5 133 32.3
DCAR_011836 Daucus carota HOM05D005469 ORTHO05D001701 6.1e-07 58.5 168 30.4
MBI03_g43893_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 6.1e-07 58.5 131 31.3
GSVIVG01032773001 Vitis vinifera HOM05D005469 ORTHO05D001701 7.9e-07 58.2 146 30.8
Ah.10g036310 Amaranthus hybridus HOM05D005469 ORTHO05D001701 1.0e-06 57.8 136 29.4
EL10Ac2g04878 Beta vulgaris HOM05D005469 ORTHO05D001701 1.0e-06 57.8 136 29.4
Lalb_Chr01g0018511 Lupinus albus HOM05D007206 ORTHO05D009176 1.0e-06 57.8 55 45.5
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.0e-06 57.8 175 30.3
BcaC05g29507 Brassica carinata HOM05D007206 ORTHO05D009176 1.4e-06 57.4 63 44.4
MBI15_g40303_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 1.4e-06 57.4 133 34.6
Solyc05g052500.4 Solanum lycopersicum HOM05D000087 ORTHO05D000793 3.0e-06 56.2 172 28.5
Nitab4.5_0003391g0070 Nicotiana tabacum HOM05D000087 ORTHO05D000793 3.9e-06 55.8 103 34.0
Solyc02g078060.1 Solanum lycopersicum HOM05D003009 ORTHO05D001701 3.9e-06 55.8 114 30.7
Manes.10G009700 Manihot esculenta HOM05D005469 ORTHO05D001701 5.1e-06 55.5 177 28.2
Nitab4.5_0001652g0140 Nicotiana tabacum HOM05D003009 ORTHO05D001701 5.1e-06 55.5 99 31.3
Nitab4.5_0001652g0160 Nicotiana tabacum HOM05D003009 ORTHO05D001701 5.1e-06 55.5 139 28.8
Nitab4.5_0012561g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 5.1e-06 55.5 96 33.3
THA.LOC104826842 Tarenaya hassleriana HOM05D005469 ORTHO05D001701 5.1e-06 55.5 142 29.6
COL.COLO4_25530 Corchorus olitorius HOM05D005469 ORTHO05D001701 6.7e-06 55.1 167 28.1
CAN.G529.9 Capsicum annuum HOM05D000185 ORTHO05D001701 8.8e-06 54.7 97 34.0
Sc10g0002540 Simmondsia chinensis HOM05D005469 ORTHO05D001701 8.8e-06 54.7 132 31.1


User provided reference genes

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