Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00421 Erythranthe guttata HOM05D004352 ORTHO05D000003 7.6e-155 550.4 275 100.0
MSTRG.5725 Avicennia marina HOM05D004352 ORTHO05D000003 4.2e-68 262.3 274 54.0
SalBow3G0591 Salvia bowleyana HOM05D001631 ORTHO05D001591 1.6e-59 233.8 292 49.0
SalBow3G0546 Salvia bowleyana HOM05D001631 ORTHO05D000003 6.0e-59 231.9 292 47.9
Oeu026847.1 Olea europaea HOM05D004352 ORTHO05D000003 9.6e-57 224.6 318 44.3
MSTRG.10300 Avicennia marina HOM05D004352 ORTHO05D000003 1.8e-55 220.3 293 46.8
Migut.L01663 Erythranthe guttata HOM05D004352 ORTHO05D000003 1.7e-53 213.8 300 45.0
Oeu035139.1 Olea europaea HOM05D004352 ORTHO05D000003 4.6e-51 205.7 336 40.5
MSTRG.26723 Avicennia marina HOM05D004352 ORTHO05D000003 7.9e-51 204.9 276 47.1
SGA_v2.0_scaffold126G33905 Striga asiatica HOM05D004352 ORTHO05D000003 1.3e-50 204.1 282 46.1
SGA_v2.0_scaffold75G24878 Striga asiatica HOM05D004352 ORTHO05D000003 1.9e-49 200.3 276 47.8
unitig_26.g9216 Utricularia gibba HOM05D004352 ORTHO05D000003 3.5e-43 179.5 288 41.3
Nitab4.5_0007806g0010 Nicotiana tabacum HOM05D004352 ORTHO05D000003 1.4e-39 167.5 245 39.6
SGA_v2.0_scaffold94G28669 Striga asiatica HOM05D004352 ORTHO05D000003 6.9e-39 165.2 298 39.3
Cc06_g03620 Coffea canephora HOM05D004352 ORTHO05D000003 1.5e-38 164.1 281 37.0
PGSC0003DMG400001770 Solanum tuberosum HOM05D004352 ORTHO05D000003 3.4e-38 162.9 243 42.0
SGA_v2.0_scaffold35G14157 Striga asiatica HOM05D004352 ORTHO05D000003 4.5e-38 162.5 249 43.4
Solyc09g007430.1 Solanum lycopersicum HOM05D004352 ORTHO05D000003 1.9e-36 157.1 243 41.2
Sopen09g002310 Solanum pennellii HOM05D004352 ORTHO05D000003 1.9e-36 157.1 244 40.2
Peaxi162Scf00005g04212 Petunia axillaris HOM05D004352 ORTHO05D000003 3.2e-36 156.4 280 36.8
CAN.G1676.8 Capsicum annuum HOM05D004352 ORTHO05D000003 7.2e-36 155.2 280 37.1
SalBow4G0369 Salvia bowleyana HOM05D004352 ORTHO05D000003 4.1e-31 139.4 266 38.7
SalBow4G2938 Salvia bowleyana HOM05D004352 ORTHO05D000003 4.1e-31 139.4 266 38.7
Cfa020717 Carpinus fangiana HOM05D004352 ORTHO05D000003 3.8e-29 132.9 201 36.8
CSS0042579 Camellia sinensis var. sinensis HOM05D004352 ORTHO05D000003 1.6e-27 127.5 318 30.8
Haze_19032 Corylus avellana HOM05D004352 ORTHO05D000003 2.7e-27 126.7 201 36.8
HanXRQChr05g0142011 Helianthus annuus HOM05D004352 ORTHO05D000003 3.3e-25 119.8 280 32.1
Rhsim01G0002900 Rhododendron simsii HOM05D004352 ORTHO05D000003 4.3e-25 119.4 197 34.5
TAR625G0076 Trochodendron aralioides HOM05D004352 ORTHO05D000003 1.3e-24 117.9 228 35.1
Dinv25487 Davidia involucrata HOM05D004352 ORTHO05D000003 1.7e-24 117.5 118 45.8
QL01p007347 Quercus lobata HOM05D004352 ORTHO05D000003 2.2e-24 117.1 235 34.0
Actinidia01307 Actinidia chinensis HOM05D004352 ORTHO05D000003 6.3e-24 115.5 283 29.7
Duzib132G0390 Durio zibethinus HOM05D004352 ORTHO05D000003 2.4e-23 113.6 178 38.2
arahy.Tifrunner.gnm1.ann1.1ZQN8W Arachis hypogaea HOM05D004352 ORTHO05D000003 3.1e-23 113.2 236 33.9
Cpa.g.sc30.130 Carica papaya HOM05D004352 ORTHO05D000003 3.1e-23 113.2 265 31.3
Thecc.02G005400 Theobroma cacao HOM05D004352 ORTHO05D000003 4.1e-23 112.8 157 38.9
arahy.Tifrunner.gnm1.ann1.DBS0PV Arachis hypogaea HOM05D004352 ORTHO05D000003 5.3e-23 112.5 236 33.9
GSVIVG01029254001 Vitis vinifera HOM05D004352 ORTHO05D000003 5.3e-23 112.5 198 37.9
Nn8g40402 Nelumbo nucifera HOM05D004352 ORTHO05D000003 2.0e-22 110.5 187 38.5
Aqoxy7G02951 Aquilegia oxysepala HOM05D004352 ORTHO05D000003 5.9e-22 109.0 131 42.7
PGR044G1339 Punica granatum HOM05D004352 ORTHO05D000003 7.7e-22 108.6 132 43.2
Aqoxy7G02955 Aquilegia oxysepala HOM05D004352 ORTHO05D000003 1.0e-21 108.2 131 42.0
Ciclev10015693m.g Citrus clementina HOM05D004352 ORTHO05D000003 2.9e-21 106.7 229 31.4
vmacro13134 Vaccinium macrocarpon HOM05D004352 ORTHO05D000003 2.9e-21 106.7 89 53.9
ECA236G5076 Erigeron canadensis HOM05D004352 ORTHO05D000003 3.8e-21 106.3 290 29.7
DCAR_020138 Daucus carota HOM05D004352 ORTHO05D000003 5.0e-21 105.9 197 36.0
THA.LOC104812701 Tarenaya hassleriana HOM05D004352 ORTHO05D000003 5.0e-21 105.9 118 44.1
PSO421G0072 Papaver somniferum HOM05D004352 ORTHO05D000003 6.5e-21 105.5 187 35.8
Atru.chr10.647 Acer truncatum HOM05D004352 ORTHO05D000003 1.1e-20 104.8 126 42.9
Eucgr.B03962 Eucalyptus grandis HOM05D004352 ORTHO05D000003 1.1e-20 104.8 249 28.9
Gohir.A04G134500 Gossypium hirsutum HOM05D004352 ORTHO05D000003 1.1e-20 104.8 240 32.5
Gohir.D04G177700 Gossypium hirsutum HOM05D004352 ORTHO05D000003 5.5e-20 102.4 138 42.0
Gorai.012G170600 Gossypium raimondii HOM05D004352 ORTHO05D000003 5.5e-20 102.4 138 42.0
Manes.15G101900 Manihot esculenta HOM05D004352 ORTHO05D000003 1.2e-19 101.3 168 34.5
Hma1.2p1_0235F.1_g098960 Hydrangea macrophylla HOM05D004352 ORTHO05D000003 2.1e-19 100.5 182 35.7
PSO063G0960 Papaver somniferum HOM05D004352 ORTHO05D000003 2.7e-19 100.1 187 36.4
Sp7g18470 Schrenkiella parvula HOM05D004352 ORTHO05D000003 1.4e-18 97.8 194 31.4
Prupe.4G108900 Prunus persica HOM05D004352 ORTHO05D000003 3.9e-18 96.3 238 29.0
Aa31LG2G14980 Aethionema arabicum HOM05D004352 ORTHO05D000003 5.1e-18 95.9 165 37.6
Ca_25626_v3 Cicer arietinum L. HOM05D004352 ORTHO05D000003 5.1e-18 95.9 140 37.1
Psat1g050880 Pisum sativum HOM05D004352 ORTHO05D000003 5.1e-18 95.9 116 44.0
Potri.001G394200 Populus trichocarpa HOM05D004352 ORTHO05D000003 5.1e-18 95.9 113 36.3
AL7G33850 Arabidopsis lyrata HOM05D004352 ORTHO05D000003 6.7e-18 95.5 207 29.5
Thhalv10008085m.g Eutrema salsugineum HOM05D004352 ORTHO05D000003 6.7e-18 95.5 175 32.6
Aa31LG6G2430 Aethionema arabicum HOM05D004352 ORTHO05D000003 8.8e-18 95.1 250 26.8
PSO063G4384 Papaver somniferum HOM05D004352 ORTHO05D000003 8.8e-18 95.1 114 40.4
BcaC05g27132 Brassica carinata HOM05D004352 ORTHO05D000003 1.1e-17 94.7 130 37.7
C05p30170 Brassica napus HOM05D004352 ORTHO05D000003 1.1e-17 94.7 130 37.7
CANSAT11G1113 Cannabis sativa HOM05D004352 ORTHO05D000003 1.5e-17 94.4 289 28.4
Thhalv10025547m.g Eutrema salsugineum HOM05D004352 ORTHO05D000003 2.0e-17 94.0 194 28.9
Hma1.2p1_0726F.1_g208940 Hydrangea macrophylla HOM05D004352 ORTHO05D000003 2.0e-17 94.0 193 33.2
PSO170G4619 Papaver somniferum HOM05D004352 ORTHO05D000003 2.0e-17 94.0 112 38.4
AT4G20010 Arabidopsis thaliana HOM05D004352 ORTHO05D000003 2.6e-17 93.6 196 29.1
CARHR226800 Cardamine hirsuta HOM05D004352 ORTHO05D000003 4.4e-17 92.8 194 30.4
Lj2g0002936 Lotus japonicus HOM05D004352 ORTHO05D000003 4.4e-17 92.8 115 41.7
Nitab4.5_0000669g0190 Nicotiana tabacum HOM05D004352 ORTHO05D000003 4.4e-17 92.8 142 39.4
CARHR030540 Cardamine hirsuta HOM05D004352 ORTHO05D000003 5.7e-17 92.4 164 35.4
Sc17g0003750 Simmondsia chinensis HOM05D004352 ORTHO05D000003 5.7e-17 92.4 174 36.2
RcHm_v2.0_Chr5g0019771 Rosa chinensis HOM05D004352 ORTHO05D000003 9.7e-17 91.7 142 32.4
AL8G14740 Arabidopsis lyrata HOM05D004352 ORTHO05D000003 1.7e-16 90.9 124 37.9
AT5G44785 Arabidopsis thaliana HOM05D004352 ORTHO05D000003 1.7e-16 90.9 109 41.3
TPR.G35494 Trifolium pratense HOM05D004352 ORTHO05D000003 1.7e-16 90.9 199 32.7
ATR0580G332 Amborella trichopoda HOM05D004352 ORTHO05D000003 2.2e-16 90.5 112 38.4
BolC5t31754H Brassica oleracea HOM05D004352 ORTHO05D000003 2.2e-16 90.5 104 44.2
EL10Ac8g18326 Beta vulgaris HOM05D004352 ORTHO05D000003 2.8e-16 90.1 122 43.4
A09p35220 Brassica napus HOM05D004352 ORTHO05D000003 2.8e-16 90.1 170 31.8
Phvul.004G177000 Phaseolus vulgaris HOM05D004352 ORTHO05D000003 2.8e-16 90.1 211 29.9
Sabra16G0258300 Salix brachista HOM05D004352 ORTHO05D000003 3.7e-16 89.7 122 36.1
MBI14_g19446_MAGBIO Magnolia biondii HOM05D004352 ORTHO05D000003 4.8e-16 89.4 135 36.3
CDE02G3053 Ceratophyllum demersum HOM05D004352 ORTHO05D000003 6.3e-16 89.0 111 39.6
AT1G31010 Arabidopsis thaliana HOM05D004352 ORTHO05D000003 8.2e-16 88.6 94 46.8
FvH4_3g12060 Fragaria vesca HOM05D004352 ORTHO05D000003 8.2e-16 88.6 194 30.4
HPP92_010776 Vanilla planifolia HOM05D004352 ORTHO05D000003 1.1e-15 88.2 222 28.8
AL1G45420 Arabidopsis lyrata HOM05D004352 ORTHO05D000003 1.4e-15 87.8 142 39.4
Carub.0007s2112 Capsella rubella HOM05D004352 ORTHO05D000003 1.4e-15 87.8 194 28.4
FAN21G2670 Fragaria x ananassa HOM05D004352 ORTHO05D000003 1.4e-15 87.8 197 29.4
BcaC06g31587 Brassica carinata HOM05D004352 ORTHO05D000003 1.8e-15 87.4 160 35.0
Lalb_Chr14g0375371 Lupinus albus HOM05D004352 ORTHO05D000003 1.8e-15 87.4 199 31.7
BcaC06g34508 Brassica carinata HOM05D004352 ORTHO05D000003 2.4e-15 87.0 110 40.9
C07p27740 Brassica napus HOM05D004352 ORTHO05D000003 2.4e-15 87.0 110 40.9
BraA09t39049Z Brassica rapa HOM05D004352 ORTHO05D000003 2.4e-15 87.0 98 43.9
Carub.0001s2940 Capsella rubella HOM05D004352 ORTHO05D000003 2.4e-15 87.0 133 37.6
THA.LOC104806221 Tarenaya hassleriana HOM05D004352 ORTHO05D000003 2.4e-15 87.0 110 38.2
Sp2g09630 Schrenkiella parvula HOM05D004352 ORTHO05D000003 5.3e-15 85.9 178 30.9
A03p52240 Brassica napus HOM05D004352 ORTHO05D000003 7.0e-15 85.5 194 29.9
Sp1g26870 Schrenkiella parvula HOM05D004352 ORTHO05D000003 9.1e-15 85.1 121 34.7
A06p46900 Brassica napus HOM05D004352 ORTHO05D000003 1.2e-14 84.7 218 27.1
Glyma.07G129800 Glycine max HOM05D004352 ORTHO05D000003 1.2e-14 84.7 117 36.8
MD05G1254900 Malus domestica HOM05D004352 ORTHO05D000003 1.2e-14 84.7 124 37.1
BcaNung03486 Brassica carinata HOM05D004352 ORTHO05D000003 1.6e-14 84.3 252 27.0
BolC7t43306H Brassica oleracea HOM05D004352 ORTHO05D000003 1.6e-14 84.3 156 34.6
BolC7t45570H Brassica oleracea HOM05D004352 ORTHO05D000003 1.6e-14 84.3 252 27.0
Medtr6g092780 Medicago truncatula HOM05D004352 ORTHO05D000003 1.6e-14 84.3 206 29.1
BraA03t14299Z Brassica rapa HOM05D004352 ORTHO05D000003 2.0e-14 84.0 194 28.4
SHI18056 Sapria himalayana HOM05D004352 ORTHO05D000003 2.0e-14 84.0 174 31.6
Thhalv10000889m.g Eutrema salsugineum HOM05D004352 ORTHO05D000003 3.5e-14 83.2 167 31.1
Carub.0008s0348 Capsella rubella HOM05D004352 ORTHO05D000003 4.5e-14 82.8 109 36.7
BraA06t27564Z Brassica rapa HOM05D004352 ORTHO05D000003 5.9e-14 82.4 178 30.3
CARHR178090 Cardamine hirsuta HOM05D004352 ORTHO05D000003 5.0e-13 79.3 208 25.5
Hund26315 Selenicereus undatus HOM05D004352 ORTHO05D000003 8.5e-13 78.6 160 33.1
Zm00001eb363090 Zea mays HOM05D004352 ORTHO05D000003 1.5e-12 77.8 196 27.6
BcaC06g30639 Brassica carinata HOM05D004352 ORTHO05D000003 1.9e-12 77.4 252 26.6
Os01g0949060 Oryza sativa ssp. japonica HOM05D004352 ORTHO05D000003 1.9e-12 77.4 196 30.6
SGA_v2.0_scaffold30G12490 Striga asiatica HOM05D004352 ORTHO05D000003 9.4e-12 75.1 257 30.4
PSO170G5433 Papaver somniferum HOM05D004352 ORTHO05D000003 1.2e-11 74.7 115 36.5
C07p50670 Brassica napus HOM05D004352 ORTHO05D000003 2.1e-11 73.9 278 25.2
AUR62021340 Chenopodium quinoa HOM05D004352 ORTHO05D000003 2.7e-11 73.6 102 38.2
Sc05g0001020 Simmondsia chinensis HOM05D003108 ORTHO05D000003 6.1e-11 72.4 120 36.7
Ah.14g083610 Amaranthus hybridus HOM05D004352 ORTHO05D000003 1.8e-10 70.9 119 40.3
VMungo0464G2174 Vigna mungo HOM05D004352 ORTHO05D000003 1.8e-10 70.9 144 28.5
Glyma.10G031700 Glycine max HOM05D003108 ORTHO05D000003 2.3e-10 70.5 200 29.5
Ah.02g111620 Amaranthus hybridus HOM05D003108 ORTHO05D000003 6.7e-10 68.9 118 34.7
AUR62032259 Chenopodium quinoa HOM05D003108 ORTHO05D000003 6.7e-10 68.9 200 27.5
PSO407G0216 Papaver somniferum HOM05D004352 ORTHO05D000003 6.7e-10 68.9 115 34.8
Lj5g0023638 Lotus japonicus HOM05D003108 ORTHO05D000003 8.8e-10 68.6 197 25.9
ClCG09G007510 Citrullus lanatus HOM05D003108 ORTHO05D000003 1.1e-09 68.2 112 32.1
VMungo0720G2958 Vigna mungo HOM05D003108 ORTHO05D000003 1.1e-09 68.2 112 33.0
AUR62011944 Chenopodium quinoa HOM05D003108 ORTHO05D000003 1.5e-09 67.8 115 34.8
MD10G1235000 Malus domestica HOM05D004352 ORTHO05D000003 2.0e-09 67.4 181 29.3
Ca_09717_v3 Cicer arietinum L. HOM05D003108 ORTHO05D000003 2.6e-09 67.0 197 26.9
Glyma.02G142700 Glycine max HOM05D003108 ORTHO05D000003 2.6e-09 67.0 142 32.4
Phvul.007G176800 Phaseolus vulgaris HOM05D003108 ORTHO05D000003 2.6e-09 67.0 112 33.9
MELO3C015761.2 Cucumis melo HOM05D003108 ORTHO05D000003 9.7e-09 65.1 175 26.3
CsaV3_7G027620 Cucumis sativus L. HOM05D003108 ORTHO05D000003 9.7e-09 65.1 175 26.9
TWI18G1277 Tripterygium wilfordii HOM05D003108 ORTHO05D000003 9.7e-09 65.1 138 29.0
Atru.chr5.1560 Acer truncatum HOM05D003108 ORTHO05D000003 1.3e-08 64.7 166 28.9
Aqoxy5G00353 Aquilegia oxysepala HOM05D003108 ORTHO05D000003 1.3e-08 64.7 197 25.9
Psat0s1875g0120 Pisum sativum HOM05D003108 ORTHO05D000003 1.3e-08 64.7 141 29.8
EL10Ac5g10472 Beta vulgaris HOM05D003108 ORTHO05D000003 2.2e-08 63.9 209 24.9
Rhsim01G0270000 Rhododendron simsii HOM05D003108 ORTHO05D000003 2.2e-08 63.9 123 30.9
FAN24G1535 Fragaria x ananassa HOM05D003108 ORTHO05D000003 4.8e-08 62.8 139 28.8
FAN27G2883 Fragaria x ananassa HOM05D003108 ORTHO05D000003 4.8e-08 62.8 139 28.8
Prupe.8G232500 Prunus persica HOM05D003108 ORTHO05D000003 4.8e-08 62.8 198 26.3
BcaB07g32759 Brassica carinata HOM05D004352 ORTHO05D000003 8.2e-08 62.0 122 30.3
Ciclev10021384m.g Citrus clementina HOM05D003108 ORTHO05D000003 8.2e-08 62.0 122 28.7
Ah.02g111490 Amaranthus hybridus HOM05D003108 ORTHO05D000003 1.4e-07 61.2 94 37.2
MD05G1206000 Malus domestica HOM05D003108 ORTHO05D000003 1.8e-07 60.8 198 25.8
Sed0004930 Sechium edule HOM05D003108 ORTHO05D000003 1.8e-07 60.8 119 27.7
Duzib211G0146 Durio zibethinus HOM05D003108 ORTHO05D000003 3.1e-07 60.1 200 24.0
FvH4_2g22540 Fragaria vesca HOM05D003108 ORTHO05D000003 3.1e-07 60.1 128 29.7
Solyc09g065840.3 Solanum lycopersicum HOM05D003108 ORTHO05D000003 3.1e-07 60.1 143 28.0
RcHm_v2.0_Chr6g0289591 Rosa chinensis HOM05D003108 ORTHO05D000003 4.1e-07 59.7 128 28.9
MD10G1193100 Malus domestica HOM05D003108 ORTHO05D000003 5.3e-07 59.3 198 25.3
Sopen09g027630 Solanum pennellii HOM05D003108 ORTHO05D000003 5.3e-07 59.3 117 29.9
FAN15G1244 Fragaria x ananassa HOM05D003108 ORTHO05D000003 7.0e-07 58.9 111 30.6
Hund02877 Selenicereus undatus HOM05D003108 ORTHO05D000003 2.7e-06 57.0 220 25.5
CANSAT01G1651 Cannabis sativa HOM05D003108 ORTHO05D000003 3.5e-06 56.6 112 29.5
PGSC0003DMG400019333 Solanum tuberosum HOM05D003108 ORTHO05D000003 3.5e-06 56.6 189 27.0
CAN.G1072.3 Capsicum annuum HOM05D003108 ORTHO05D000003 4.5e-06 56.2 112 30.4
HanXRQChr01g0006861 Helianthus annuus HOM05D003108 ORTHO05D000003 4.5e-06 56.2 112 28.6


User provided reference genes

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