Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 5.7e-214 747.3 366 100.0
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.1e-168 595.9 370 78.6
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.0e-167 592.0 371 76.8
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.8e-164 582.8 368 77.7
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.7e-160 568.2 371 76.8
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 4.7e-160 568.2 370 76.2
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 3.7e-157 558.5 356 77.8
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.7e-155 552.4 365 75.1
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 5.0e-154 548.1 366 73.8
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.5e-153 546.6 373 73.7
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.9e-153 546.2 367 73.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 4.3e-153 545.0 368 74.5
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 5.6e-153 544.7 370 71.6
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 7.3e-153 544.3 387 71.8
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.1e-152 542.7 371 73.6
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.1e-152 542.7 374 73.5
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.6e-152 542.0 373 73.7
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 3.6e-152 542.0 309 82.8
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 6.2e-152 541.2 369 72.6
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 8.1e-152 540.8 371 73.3
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.1e-151 540.4 368 72.8
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 2.3e-151 539.3 374 72.7
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.3e-151 539.3 310 81.6
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.3e-151 539.3 369 72.9
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.0e-151 538.5 367 71.9
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 5.2e-151 538.1 373 71.3
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.9e-151 537.3 367 72.2
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.0e-150 536.2 362 74.0
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.6e-150 535.8 367 72.5
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.7e-149 533.1 371 70.9
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.7e-149 533.1 347 73.2
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.9e-149 532.3 377 70.3
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.9e-149 532.3 317 79.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 2.9e-149 532.3 368 71.2
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.7e-149 531.9 367 72.5
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 8.3e-149 530.8 377 71.9
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.1e-148 530.4 369 71.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.1e-148 530.4 347 72.6
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.4e-148 528.1 323 76.8
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 7.1e-148 527.7 369 69.4
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 9.2e-148 527.3 371 70.4
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.2e-147 526.9 374 70.9
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.2e-147 526.9 369 70.2
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.6e-147 526.6 304 80.3
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 3.5e-147 525.4 378 69.3
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 4.6e-147 525.0 334 74.9
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 4.6e-147 525.0 373 70.2
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.0e-146 523.9 315 79.4
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.3e-146 522.7 370 70.0
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 3.0e-146 522.3 377 69.0
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 3.9e-146 521.9 316 77.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.9e-146 521.9 366 70.5
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 5.1e-146 521.5 369 70.5
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.9e-145 519.6 388 66.5
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 3.3e-145 518.8 367 70.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 4.3e-145 518.5 367 70.8
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 4.3e-145 518.5 360 70.6
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 9.5e-145 517.3 369 71.8
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 9.5e-145 517.3 372 68.3
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.2e-144 516.9 371 70.9
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.6e-144 515.4 311 77.8
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.6e-144 515.4 311 77.8
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.7e-144 515.0 371 69.8
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 4.7e-144 515.0 366 69.1
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.4e-143 513.5 384 68.0
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.2e-143 511.5 314 75.8
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 6.8e-143 511.1 344 71.8
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 8.9e-143 510.8 311 77.5
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 8.9e-143 510.8 311 77.8
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-142 510.4 311 77.5
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.2e-142 510.4 311 77.8
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.2e-142 510.4 368 69.8
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.5e-142 510.0 368 66.3
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 4.4e-142 508.4 303 78.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-142 508.4 307 77.2
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 7.6e-142 507.7 369 69.4
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 7.6e-142 507.7 363 68.6
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 7.6e-142 507.7 363 68.6
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.9e-142 507.3 367 69.8
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 9.9e-142 507.3 361 70.4
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.7e-141 506.5 370 66.8
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.7e-141 506.5 484 56.6
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 2.2e-141 506.1 312 77.2
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 2.2e-141 506.1 371 66.0
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.9e-141 505.8 388 68.6
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 3.7e-141 505.4 309 76.4
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.4e-140 503.4 311 75.9
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.4e-140 503.4 370 65.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.4e-140 503.4 371 66.3
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-140 503.1 369 68.3
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.9e-140 503.1 350 71.4
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.4e-140 502.7 319 75.5
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 4.1e-140 501.9 394 65.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 7.1e-140 501.1 369 65.6
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 9.2e-140 500.7 366 66.9
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 4.6e-139 498.4 311 73.6
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.0e-138 497.3 367 65.9
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.3e-138 496.9 371 64.2
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 1.3e-138 496.9 366 65.6
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 2.3e-138 496.1 311 75.2
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 3.9e-138 495.4 364 65.7
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 8.6e-138 494.2 366 64.2
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.0e-134 483.0 367 67.6
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.0e-134 483.0 292 76.0
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.1e-132 477.2 286 74.8
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 3.0e-130 469.2 317 71.6
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.3e-128 463.8 333 71.5
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.1e-127 460.7 392 61.5
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 2.2e-125 453.0 277 77.6
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 8.7e-122 441.0 275 75.3
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-121 440.7 274 77.4
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 6.2e-120 434.9 332 65.4
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.9e-117 426.0 286 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 8.4e-117 424.5 286 67.8
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.3e-114 416.4 286 68.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-109 400.6 366 60.9
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 3.2e-108 396.0 285 70.2
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.6e-107 393.7 291 65.6
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-106 391.0 337 63.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 8.7e-106 387.9 244 74.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 9.0e-103 377.9 287 61.0
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 3.9e-98 362.5 290 60.0
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 4.1e-95 352.4 298 56.4
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.5e-94 350.5 261 67.8
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 9.4e-92 341.3 294 55.4
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 2.2e-85 320.1 327 56.6
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 5.0e-85 318.9 263 60.5
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 5.0e-85 318.9 288 56.2
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.3e-77 294.3 168 81.0
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-70 271.2 160 80.0
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 8.3e-64 248.4 222 55.9
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-57 228.0 127 82.7
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.7e-54 216.9 132 75.0
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.1e-51 207.2 148 68.9
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 9.8e-49 198.4 275 43.3
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 7.8e-46 188.7 148 64.9
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-43 180.3 148 63.5
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.6e-43 179.9 100 80.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.2e-41 174.9 107 71.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 3.9e-37 159.8 148 56.1
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.9e-34 148.7 110 60.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 5.6e-28 129.4 108 63.0
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.3e-28 129.0 72 81.9
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.2e-19 101.7 57 77.2
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.4e-18 98.2 64 71.9
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 1.5e-17 94.7 67 67.2
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-17 94.7 67 67.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.4e-15 87.4 46 80.4
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 5.4e-15 86.3 46 80.4
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 9.3e-15 85.5 44 84.1
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 4.3e-12 76.6 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 2.1e-11 74.3 35 88.6
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 6.2e-11 72.8 97 50.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 4.5e-09 66.6 71 47.9
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.7e-08 64.7 37 86.5
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 2.1e-06 57.8 118 27.1


User provided reference genes

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