Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00286 Erythranthe guttata HOM05D028916 ORTHO05D019110 1.2e-86 323.2 160 100.0
Migut.J00290 Erythranthe guttata HOM05D028916 ORTHO05D019110 1.1e-60 236.9 190 66.3
Migut.J00285 Erythranthe guttata HOM05D028916 ORTHO05D019110 6.4e-29 131.3 175 44.6
Migut.J00289 Erythranthe guttata HOM05D028916 ORTHO05D019110 6.4e-21 104.8 125 41.6
Migut.J00284 Erythranthe guttata HOM05D038591 ORTHO05D019110 1.1e-17 94.0 180 38.9
AT3G55605 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 4.5e-14 82.0 169 31.4
Psat3g135840 Pisum sativum HOM05D001009 ORTHO05D000829 1.7e-13 80.1 163 29.4
Thecc.10G034700 Theobroma cacao HOM05D001009 ORTHO05D000829 2.2e-13 79.7 170 30.6
Thhalv10010645m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 6.5e-13 78.2 169 30.2
THA.LOC104810176 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 8.4e-13 77.8 171 29.8
PGR142G2699 Punica granatum HOM05D001009 ORTHO05D000829 1.4e-12 77.0 161 29.8
TPR.G27325 Trifolium pratense HOM05D001009 ORTHO05D000829 1.4e-12 77.0 164 28.0
CANSAT56G1474 Cannabis sativa HOM05D001009 ORTHO05D000829 1.9e-12 76.6 162 31.5
Gohir.D04G064900 Gossypium hirsutum HOM05D001009 ORTHO05D000829 2.5e-12 76.3 165 30.3
Gorai.012G073000 Gossypium raimondii HOM05D001009 ORTHO05D000829 2.5e-12 76.3 165 30.3
BcaB02g08407 Brassica carinata HOM05D001009 ORTHO05D000829 3.2e-12 75.9 169 29.6
Sp5g06870 Schrenkiella parvula HOM05D001009 ORTHO05D000829 3.2e-12 75.9 169 29.6
THA.LOC104810052 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 4.2e-12 75.5 171 31.0
CARHR165660 Cardamine hirsuta HOM05D001009 ORTHO05D000829 5.5e-12 75.1 170 29.4
Duzib106G0916 Durio zibethinus HOM05D001009 ORTHO05D000829 5.5e-12 75.1 166 29.5
TWI77G0127 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 7.1e-12 74.7 163 29.4
Actinidia02375 Actinidia chinensis HOM05D001009 ORTHO05D000829 9.3e-12 74.3 163 30.7
Nitab4.5_0000779g0060 Nicotiana tabacum HOM05D001009 ORTHO05D000829 1.2e-11 73.9 166 28.9
Nitab4.5_0004474g0020 Nicotiana tabacum HOM05D001009 ORTHO05D000829 1.2e-11 73.9 163 28.2
MSTRG.8284 Avicennia marina HOM05D001009 ORTHO05D000829 1.6e-11 73.6 163 29.4
A04p04370 Brassica napus HOM05D001009 ORTHO05D000829 1.6e-11 73.6 173 29.5
BraA04t16147Z Brassica rapa HOM05D001009 ORTHO05D000829 1.6e-11 73.6 173 29.5
ClCG11G006610 Citrullus lanatus HOM05D001009 ORTHO05D000829 1.6e-11 73.6 168 29.2
BcaC02g09772 Brassica carinata HOM05D001009 ORTHO05D000829 2.1e-11 73.2 172 29.7
C04p36760 Brassica napus HOM05D001009 ORTHO05D000829 2.1e-11 73.2 172 29.7
Carub.0005s2235 Capsella rubella HOM05D001009 ORTHO05D000829 2.1e-11 73.2 170 28.8
CAN.G774.39 Capsicum annuum HOM05D001009 ORTHO05D000829 2.7e-11 72.8 165 29.1
CAN.G774.44 Capsicum annuum HOM05D001009 ORTHO05D000829 2.7e-11 72.8 165 29.1
GSVIVG01016468001 Vitis vinifera HOM05D001009 ORTHO05D000829 2.7e-11 72.8 165 29.1
Duzib114G0353 Durio zibethinus HOM05D001009 ORTHO05D000829 3.5e-11 72.4 170 28.2
BolC4t25121H Brassica oleracea HOM05D001009 ORTHO05D000829 4.6e-11 72.0 173 29.5
Migut.F01285 Erythranthe guttata HOM05D001009 ORTHO05D000829 4.6e-11 72.0 163 30.7
Medtr5g080880 Medicago truncatula HOM05D001009 ORTHO05D000829 4.6e-11 72.0 164 30.5
Sed0016308 Sechium edule HOM05D001009 ORTHO05D000829 4.6e-11 72.0 167 28.7
CiPaw.01G292100 Carya illinoinensis HOM05D001009 ORTHO05D000829 6.1e-11 71.6 161 27.3
AUR62040690 Chenopodium quinoa HOM05D001009 ORTHO05D000829 6.1e-11 71.6 155 28.4
Gohir.A10G223300 Gossypium hirsutum HOM05D001009 ORTHO05D000829 6.1e-11 71.6 164 28.0
Oeu059732.1 Olea europaea HOM05D001009 ORTHO05D000829 6.1e-11 71.6 164 29.9
Peaxi162Scf00611g00321 Petunia axillaris HOM05D001009 ORTHO05D000829 6.1e-11 71.6 166 29.5
Sed0014530 Sechium edule HOM05D001009 ORTHO05D000829 7.9e-11 71.2 170 28.8
TWI63G0148 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 7.9e-11 71.2 167 29.3
CSS0049537 Camellia sinensis var. sinensis HOM05D001009 ORTHO05D000829 1.0e-10 70.9 166 28.3
Lj8A78T47 Lonicera japonica HOM05D001009 ORTHO05D000829 1.3e-10 70.5 166 28.3
Lj1g0004447 Lotus japonicus HOM05D001009 ORTHO05D000829 1.3e-10 70.5 166 26.5
MELO3C008244.2 Cucumis melo HOM05D001009 ORTHO05D000829 2.3e-10 69.7 166 28.3
FAN06G3918 Fragaria x ananassa HOM05D001009 ORTHO05D000829 2.3e-10 69.7 163 30.1
vmacro10213 Vaccinium macrocarpon HOM05D001009 ORTHO05D000829 2.3e-10 69.7 164 28.7
Ca_05446_v3 Cicer arietinum L. HOM05D001009 ORTHO05D000829 3.0e-10 69.3 161 26.1
CsaV3_6G001390 Cucumis sativus L. HOM05D001009 ORTHO05D000829 3.0e-10 69.3 170 28.2
Glyma.18G187800 Glycine max HOM05D001009 ORTHO05D000829 3.0e-10 69.3 166 25.9
QL08p061631 Quercus lobata HOM05D001009 ORTHO05D000829 3.0e-10 69.3 165 26.7
TPR.G25850 Trifolium pratense HOM05D001009 ORTHO05D000829 3.0e-10 69.3 164 28.7
COL.COLO4_25520 Corchorus olitorius HOM05D001009 ORTHO05D000829 3.9e-10 68.9 170 27.6
SalBow6G2327 Salvia bowleyana HOM05D001009 ORTHO05D000829 3.9e-10 68.9 165 27.9
Prupe.6G262100 Prunus persica HOM05D001009 ORTHO05D000829 5.1e-10 68.6 163 27.6
Sed0001214 Sechium edule HOM05D001009 ORTHO05D000829 5.1e-10 68.6 169 29.0
Solyc03g079930.3 Solanum lycopersicum HOM05D001009 ORTHO05D000829 5.1e-10 68.6 164 27.4
Sopen03g027200 Solanum pennellii HOM05D001009 ORTHO05D000829 5.1e-10 68.6 164 27.4
PGSC0003DMG400021701 Solanum tuberosum HOM05D001009 ORTHO05D000829 5.1e-10 68.6 165 27.3
FvH4_7g23410 Fragaria vesca HOM05D001009 ORTHO05D000829 6.7e-10 68.2 163 29.4
FAN03G2210 Fragaria x ananassa HOM05D001009 ORTHO05D000829 6.7e-10 68.2 166 29.5
FAN06G0325 Fragaria x ananassa HOM05D001009 ORTHO05D000829 6.7e-10 68.2 163 29.4
Nitab4.5_0000987g0110 Nicotiana tabacum HOM05D001009 ORTHO05D000829 6.7e-10 68.2 164 28.0
Aa31LG5G19830 Aethionema arabicum HOM05D001009 ORTHO05D000829 8.7e-10 67.8 168 28.0
Ah.16g102680 Amaranthus hybridus HOM05D002357 ORTHO05D002676 8.7e-10 67.8 170 28.8
Nn2g11241 Nelumbo nucifera HOM05D001009 ORTHO05D000829 8.7e-10 67.8 157 30.6
RcHm_v2.0_Chr3g0465131 Rosa chinensis HOM05D001009 ORTHO05D000829 8.7e-10 67.8 163 34.4
HPP92_001610 Vanilla planifolia HOM05D001009 ORTHO05D000829 1.1e-09 67.4 171 27.5
AL5G36810 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 1.5e-09 67.0 127 30.7
AUR62012145 Chenopodium quinoa HOM05D001009 ORTHO05D000829 1.5e-09 67.0 167 26.9
Haze_20851 Corylus avellana HOM05D001009 ORTHO05D000829 1.5e-09 67.0 166 28.3
Medtr7g063520 Medicago truncatula HOM05D001009 ORTHO05D000829 1.5e-09 67.0 166 25.3
Nitab4.5_0006374g0010 Nicotiana tabacum HOM05D001009 ORTHO05D000829 1.5e-09 67.0 164 26.2
FAN10G4249 Fragaria x ananassa HOM05D001009 ORTHO05D000829 1.9e-09 66.6 163 28.8
Gorai.011G269600 Gossypium raimondii HOM05D001009 ORTHO05D000829 1.9e-09 66.6 167 27.5
Glyma.07G137100 Glycine max HOM05D001009 ORTHO05D000829 2.5e-09 66.2 166 25.3
Phvul.008G115200 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 2.5e-09 66.2 163 25.2
ATR0559G287 Amborella trichopoda HOM05D001009 ORTHO05D000829 3.3e-09 65.9 167 27.5
Dinv34469 Davidia involucrata HOM05D001009 ORTHO05D000829 3.3e-09 65.9 168 26.8
EL10Ac2g04692 Beta vulgaris HOM05D001009 ORTHO05D000829 4.3e-09 65.5 166 26.5
Haze_20850 Corylus avellana HOM05D001009 ORTHO05D000829 4.3e-09 65.5 166 26.5
Peaxi162Scf00584g00014 Petunia axillaris HOM05D001009 ORTHO05D000829 4.3e-09 65.5 167 27.5
Prupe.2G240700 Prunus persica HOM05D001009 ORTHO05D000829 4.3e-09 65.5 164 28.0
VMungo1383G3310 Vigna mungo HOM05D001009 ORTHO05D000829 4.3e-09 65.5 159 25.8
CANSAT35G1073 Cannabis sativa HOM05D001009 ORTHO05D000829 5.7e-09 65.1 168 26.2
DCAR_027590 Daucus carota HOM05D001009 ORTHO05D000829 5.7e-09 65.1 161 28.6
FAN05G5018 Fragaria x ananassa HOM05D000229 ORTHO05D000182 5.7e-09 65.1 168 32.7
Lj2A88T72 Lonicera japonica HOM05D001009 ORTHO05D000829 5.7e-09 65.1 159 30.2
RcHm_v2.0_Chr1g0368531 Rosa chinensis HOM05D001009 ORTHO05D000829 5.7e-09 65.1 167 28.7
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 7.4e-09 64.7 168 28.0
Gohir.D10G235808 Gossypium hirsutum HOM05D001009 ORTHO05D000829 7.4e-09 64.7 167 26.9
Sed0007137 Sechium edule HOM05D001009 ORTHO05D000829 7.4e-09 64.7 170 27.1
Cfa001417 Carpinus fangiana HOM05D001009 ORTHO05D000829 9.7e-09 64.3 164 26.2
MD07G1204400 Malus domestica HOM05D001009 ORTHO05D000829 9.7e-09 64.3 165 25.5
Haze_17127 Corylus avellana HOM05D001009 ORTHO05D000829 1.3e-08 63.9 171 24.6
arahy.Tifrunner.gnm1.ann1.W9PXM2 Arachis hypogaea HOM05D001009 ORTHO05D000829 1.6e-08 63.5 163 26.4
Hma1.2p1_2902F.1_g330050 Hydrangea macrophylla HOM05D001009 ORTHO05D000829 1.6e-08 63.5 165 27.9
Manes.09G096200 Manihot esculenta HOM05D001009 ORTHO05D000829 1.6e-08 63.5 169 27.2
arahy.Tifrunner.gnm1.ann1.H18GF1 Arachis hypogaea HOM05D001009 ORTHO05D000829 2.2e-08 63.2 163 26.4
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 2.2e-08 63.2 156 28.8
Eucgr.G02989 Eucalyptus grandis HOM05D001009 ORTHO05D000829 2.2e-08 63.2 164 27.4
HanXRQChr09g0247071 Helianthus annuus HOM05D001009 ORTHO05D000829 2.2e-08 63.2 165 26.7
Rhsim09G0168700 Rhododendron simsii HOM05D001009 ORTHO05D000829 2.2e-08 63.2 163 27.0
Sed0028218 Sechium edule HOM05D001009 ORTHO05D000829 2.2e-08 63.2 166 27.1
Hma1.2p1_0026F.1_g016350 Hydrangea macrophylla HOM05D001009 ORTHO05D000829 2.8e-08 62.8 165 27.9
MD00G1141400 Malus domestica HOM05D001009 ORTHO05D000829 2.8e-08 62.8 153 30.7
MSTRG.263 Avicennia marina HOM05D001009 ORTHO05D000829 4.8e-08 62.0 166 27.7
Carub.0006s0489 Capsella rubella HOM05D001009 ORTHO05D000829 4.8e-08 62.0 173 26.6
MD12G1094400 Malus domestica HOM05D001009 ORTHO05D000829 4.8e-08 62.0 165 24.2
HPP92_015487 Vanilla planifolia HOM05D001009 ORTHO05D000829 4.8e-08 62.0 169 25.4
Atru.chr3.859 Acer truncatum HOM05D001009 ORTHO05D000829 6.3e-08 61.6 154 27.9
AL6G15950 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 6.3e-08 61.6 172 26.2
AT5G05990 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 6.3e-08 61.6 175 26.9
Cpa.g.sc33.170 Carica papaya HOM05D001009 ORTHO05D000829 6.3e-08 61.6 161 27.3
MD12G1150500 Malus domestica HOM05D001009 ORTHO05D000829 6.3e-08 61.6 147 30.6
SalBow6G5081 Salvia bowleyana HOM05D001009 ORTHO05D000829 6.3e-08 61.6 165 26.1
QL08p061636 Quercus lobata HOM05D001009 ORTHO05D000829 1.1e-07 60.8 165 26.1
Migut.J00287 Erythranthe guttata HOM05D053850 ORTHO05D189602 1.4e-07 60.5 169 27.2
PSO675G1569 Papaver somniferum HOM05D001009 ORTHO05D000829 1.4e-07 60.5 171 24.0
Sopen09g006000 Solanum pennellii HOM05D001009 ORTHO05D000829 1.4e-07 60.5 165 25.5
TAR636G2594 Trochodendron aralioides HOM05D001009 ORTHO05D000829 1.4e-07 60.5 171 25.7
MD01G1140100 Malus domestica HOM05D001009 ORTHO05D000829 1.8e-07 60.1 168 25.0
Nn6g31598 Nelumbo nucifera HOM05D001009 ORTHO05D000829 1.8e-07 60.1 169 26.6
PSO339G1455 Papaver somniferum HOM05D001009 ORTHO05D000829 1.8e-07 60.1 167 29.3
PSO541G5663 Papaver somniferum HOM05D001009 ORTHO05D000829 1.8e-07 60.1 171 24.6
Atru.chr12.341 Acer truncatum HOM05D001009 ORTHO05D000829 2.4e-07 59.7 164 23.8
Thhalv10014433m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 2.4e-07 59.7 171 25.1
TAR636G1456 Trochodendron aralioides HOM05D001009 ORTHO05D000829 2.4e-07 59.7 169 25.4
Migut.J00291 Erythranthe guttata HOM05D053850 ORTHO05D019110 4.1e-07 58.9 168 26.2
THA.LOC104816579 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 4.1e-07 58.9 173 26.6
THA.LOC104823266 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 4.1e-07 58.9 172 29.1
CARHR207220 Cardamine hirsuta HOM05D001009 ORTHO05D000829 5.3e-07 58.5 172 25.6
Lalb_Chr03g0042541 Lupinus albus HOM05D001009 ORTHO05D000829 5.3e-07 58.5 168 26.8
Carub.0006s0090 Capsella rubella HOM05D001009 ORTHO05D000829 6.9e-07 58.2 174 27.0
Eucgr.E02483 Eucalyptus grandis HOM05D001009 ORTHO05D000829 6.9e-07 58.2 163 29.4
CAN.G554.13 Capsicum annuum HOM05D001009 ORTHO05D000829 2.0e-06 56.6 161 25.5
Manes.11G064600 Manihot esculenta HOM05D001009 ORTHO05D000829 2.0e-06 56.6 155 30.3
THA.LOC104816245 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 2.0e-06 56.6 163 28.8
Aa31LG1G22650 Aethionema arabicum HOM05D001009 ORTHO05D000829 2.6e-06 56.2 162 26.5
TWI74G1509 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 2.6e-06 56.2 163 26.4
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 5.9e-06 55.1 162 25.9
Eucgr.E02491 Eucalyptus grandis HOM05D001009 ORTHO05D000829 1.0e-05 54.3 163 28.2


User provided reference genes

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