Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1561.2 768 100.0
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1132.5 782 71.4
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1128.2 782 71.2
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1125.2 783 71.5
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1125.2 784 70.9
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1122.5 783 71.0
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1121.7 783 71.6
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1121.7 781 70.9
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1117.4 782 71.6
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1114.4 783 70.8
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1111.3 783 71.3
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 781 71.8
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1108.2 787 71.4
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1108.2 787 71.4
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 771 71.9
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1086.6 785 69.3
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1086.6 812 69.1
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 798 69.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.3e-312 1073.5 779 69.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 2.2e-308 1062.0 782 68.2
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 4.9e-308 1060.8 784 67.9
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.9e-308 1060.8 785 67.8
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.7e-305 1052.4 778 66.7
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.7e-305 1052.4 776 66.6
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 778 66.3
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 776 66.5
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 3.3e-304 1048.1 783 67.3
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 4.3e-304 1047.7 787 67.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 7.3e-304 1047.0 779 68.8
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.1e-303 1045.4 795 66.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 3.6e-303 1044.6 784 67.2
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 6.1e-303 1043.9 783 66.5
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 4.0e-302 1041.2 777 66.2
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 4.4e-301 1037.7 776 66.6
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 4.4e-301 1037.7 778 66.2
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 9.8e-301 1036.6 777 66.8
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 6.4e-300 1033.9 783 66.2
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.4e-300 1033.9 783 66.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 7.0e-299 1030.4 777 69.2
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 783 66.0
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 777 66.3
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 783 65.9
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.0e-297 1026.5 777 66.8
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 5.6e-296 1020.8 776 65.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.6e-295 1019.2 769 65.1
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 3.6e-295 1018.1 786 64.4
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 4.7e-295 1017.7 776 66.5
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.4e-294 1016.1 776 65.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 4.0e-294 1014.6 777 66.0
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 4.0e-294 1014.6 777 65.8
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 6.8e-294 1013.8 780 65.4
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.4e-293 1011.5 789 65.0
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.8e-293 1010.0 776 65.2
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 769 68.4
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 774 65.9
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 4.9e-292 1007.7 775 65.3
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 776 65.3
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 6.6e-289 997.3 781 63.6
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 3.3e-288 995.0 783 65.9
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.1e-287 992.3 779 66.4
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.8e-287 991.9 787 63.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.4e-286 989.6 774 63.0
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.0e-286 988.0 776 64.7
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 5.2e-286 987.6 779 64.2
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 5.8e-285 984.2 786 64.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 7.5e-285 983.8 786 63.7
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 9.9e-285 983.4 782 64.8
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-284 983.0 775 64.6
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.2e-284 982.2 782 63.2
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.9e-284 981.1 821 60.2
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.9e-283 979.2 775 64.1
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-281 973.0 775 64.0
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.9e-281 971.5 774 63.4
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.1e-280 969.9 785 63.4
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.9e-280 969.1 783 62.6
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.6e-279 964.9 783 63.3
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 6.2e-279 964.1 780 61.9
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.2e-277 959.9 773 62.1
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.2e-277 959.9 787 62.0
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.6e-277 958.7 779 62.3
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 3.4e-277 958.4 811 61.4
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 4.9e-276 954.5 779 62.4
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 6.4e-276 954.1 779 62.0
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 8.4e-276 953.7 783 61.6
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-275 953.4 782 61.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.1e-275 953.4 788 61.4
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 4.2e-275 951.4 777 62.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 2.1e-274 949.1 777 62.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 3.5e-274 948.3 779 61.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.6e-274 948.0 779 61.5
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.0e-273 946.8 776 62.9
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.3e-273 946.4 779 62.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.0e-273 945.3 782 61.1
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.1e-273 944.5 783 61.4
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-272 943.0 768 61.6
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.5e-272 943.0 776 62.1
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.5e-272 942.2 785 60.6
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 7.3e-272 940.6 787 61.2
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 7.3e-272 940.6 786 62.5
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 9.6e-272 940.3 776 61.6
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 2.8e-271 938.7 776 62.1
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 6.2e-271 937.6 783 60.7
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.4e-270 935.6 787 61.0
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 2.4e-270 935.6 780 60.8
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.0e-269 932.6 816 59.2
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.8e-269 931.0 776 61.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 9.9e-269 930.2 784 59.9
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.8e-268 928.3 747 63.6
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 8.4e-268 927.2 788 60.7
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.9e-267 926.0 779 61.1
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 2.4e-267 925.6 779 61.2
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 5.4e-267 924.5 778 60.0
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 7.1e-267 924.1 785 61.4
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.1e-266 922.5 780 60.8
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.1e-265 917.9 786 60.2
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.6e-265 917.5 779 61.0
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 3.3e-264 915.2 787 59.1
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.8e-263 911.4 761 60.2
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.8e-262 909.4 774 60.2
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.8e-262 909.4 783 60.5
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.8e-257 892.9 779 58.4
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 5.6e-256 887.9 779 59.3
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 7.4e-256 887.5 734 65.1
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 9.0e-254 880.6 794 58.6
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.8e-253 877.9 770 59.6
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-251 872.8 777 57.9
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.2e-250 870.2 727 62.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.9e-248 862.8 786 57.5
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 5.6e-248 861.3 782 57.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 3.1e-246 855.5 775 57.0
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 5.3e-246 854.7 884 53.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 3.3e-240 835.5 774 56.8
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.5e-232 809.3 779 55.2
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 5.7e-232 808.1 782 55.6
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.3e-231 804.7 771 55.6
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.1e-222 775.4 740 54.5
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 8.2e-215 751.1 710 57.5
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 8.8e-209 731.1 686 55.8
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.2e-186 657.5 777 46.1
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.6e-178 630.6 762 45.0
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.0e-177 625.9 776 46.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.4e-176 622.9 780 43.8
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.3e-175 620.9 734 46.0
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 3.5e-173 612.8 794 44.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 6.0e-165 585.5 440 66.1
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.5e-160 570.9 406 70.2
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 5.8e-160 568.9 793 41.2
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.6e-154 550.8 425 64.9
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.5e-147 527.7 392 67.3
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.3e-147 526.6 395 66.8
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 8.1e-138 495.4 553 47.0
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 7.1e-126 455.7 274 77.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.1e-121 440.3 464 53.2
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-114 417.5 437 49.0
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 9.1e-113 412.1 256 75.8
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.8e-97 361.3 748 33.4
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.4e-75 287.3 278 54.0
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.0e-72 278.1 293 53.9
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 6.2e-69 266.5 766 28.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 6.2e-53 213.4 188 55.3
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.1e-39 167.2 83 85.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.1e-37 161.8 148 59.5
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.8e-29 134.0 150 52.7
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.5e-27 127.5 174 39.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.9e-27 126.3 65 80.0
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.5e-25 120.6 142 41.5
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 6.9e-12 77.0 103 39.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.0e-10 73.2 80 48.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.8e-10 71.2 46 71.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 3.2e-09 68.2 66 57.6
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.2e-08 66.2 39 71.8


User provided reference genes

Program Settings