Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.0e-270 934.1 445 100.0
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 8.6e-241 836.6 445 86.5
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.6e-239 832.4 445 87.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.4e-228 793.5 445 84.3
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 3.2e-227 791.6 442 84.4
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.5e-224 781.9 435 83.0
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.4e-222 776.2 435 82.5
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 3.1e-222 775.0 435 82.3
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 6.9e-222 773.9 440 82.0
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 9.9e-221 770.0 435 82.1
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.2e-220 768.8 512 73.0
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.9e-220 768.5 435 81.6
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.8e-220 768.1 433 82.7
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.9e-220 767.7 444 80.0
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 2.4e-219 765.4 439 83.4
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.2e-219 765.0 442 80.5
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 3.3e-216 755.0 443 80.4
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 9.6e-216 753.4 439 80.6
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.1e-211 740.0 440 78.6
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.1e-211 740.0 446 79.8
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 4.6e-210 734.6 439 78.8
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 1.0e-209 733.4 443 78.1
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.5e-208 729.6 441 78.5
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.8e-207 725.3 434 79.0
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 4.0e-206 721.5 435 77.5
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.6e-205 718.8 440 75.0
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 5.8e-205 717.6 439 77.0
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 8.4e-204 713.8 441 75.3
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 4.2e-203 711.4 440 76.6
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.6e-202 709.5 437 76.2
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 2.1e-202 709.1 447 76.3
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.7e-202 708.8 443 75.8
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 4.6e-202 708.0 433 75.8
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 3.9e-201 704.9 442 76.0
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 6.7e-201 704.1 440 75.2
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 8.7e-201 703.7 444 74.5
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 8.7e-201 703.7 449 75.1
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.5e-200 703.0 443 73.8
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.3e-200 701.8 435 75.6
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 5.7e-200 701.0 443 73.8
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 5.7e-200 701.0 433 77.6
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.3e-199 699.9 440 74.3
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.6e-199 699.5 430 76.0
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.2e-199 699.1 447 75.4
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.8e-199 698.7 437 72.8
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 4.8e-199 698.0 439 76.3
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 6.3e-199 697.6 447 75.4
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.1e-198 696.8 447 75.2
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.1e-198 696.8 445 75.1
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.4e-198 696.4 444 74.8
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.8e-198 696.0 457 72.4
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.4e-198 695.7 446 74.4
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.1e-198 695.3 448 74.1
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 4.1e-198 694.9 443 73.4
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 4.1e-198 694.9 449 73.3
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 9.0e-198 693.7 443 74.5
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.5e-197 693.0 444 73.9
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.6e-197 692.2 445 75.1
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 4.5e-197 691.4 454 72.9
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 4.5e-197 691.4 443 72.5
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 7.7e-197 690.6 447 74.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.3e-196 689.9 443 72.0
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.3e-196 689.9 443 73.8
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.7e-196 689.5 393 78.9
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.7e-196 689.5 443 74.3
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.9e-196 688.7 443 72.9
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.9e-196 688.7 442 73.1
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.9e-196 688.7 444 73.6
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 8.5e-196 687.2 440 73.2
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 8.5e-196 687.2 445 73.7
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.1e-195 686.8 454 72.7
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.9e-195 686.0 443 72.5
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-195 686.0 439 74.0
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 2.5e-195 685.6 457 72.6
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 3.2e-195 685.3 443 72.0
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 4.2e-195 684.9 439 72.0
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 4.2e-195 684.9 444 73.4
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.5e-195 684.5 453 72.6
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-194 683.3 444 72.3
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.6e-194 682.9 450 72.4
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.1e-194 682.6 459 70.6
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.7e-194 682.2 427 75.6
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.7e-194 682.2 454 72.0
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 4.6e-194 681.4 443 72.5
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 4.6e-194 681.4 442 71.7
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.6e-194 681.4 453 71.7
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 7.9e-194 680.6 444 71.8
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 7.9e-194 680.6 444 71.4
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 7.9e-194 680.6 445 72.4
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.0e-193 680.2 443 72.9
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.4e-193 679.9 439 74.5
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.0e-193 678.7 441 71.7
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 3.0e-193 678.7 446 72.0
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 3.0e-193 678.7 452 72.1
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 5.1e-193 677.9 444 72.5
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 5.1e-193 677.9 444 72.1
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.1e-192 676.8 448 71.7
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.5e-192 675.6 452 71.7
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 7.4e-192 674.1 433 74.4
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 7.4e-192 674.1 445 72.1
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 9.7e-192 673.7 482 69.1
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.3e-191 673.3 449 71.7
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.3e-191 673.3 443 72.5
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.7e-191 672.9 446 72.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.7e-191 671.8 445 71.0
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 6.3e-191 671.0 445 71.2
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 2.4e-190 669.1 366 83.1
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.4e-190 669.1 366 83.1
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 2.6e-189 665.6 442 71.0
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 3.4e-189 665.2 392 79.8
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.3e-188 663.3 437 70.5
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 4.2e-187 658.3 440 71.1
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 3.6e-186 655.2 436 70.4
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 4.1e-182 641.7 389 74.8
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 4.4e-176 621.7 447 68.0
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 7.0e-174 614.4 436 68.1
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.1e-171 607.1 344 81.1
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.5e-171 605.9 452 64.6
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 3.6e-170 602.1 322 84.5
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 6.7e-169 597.8 326 82.8
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 8.0e-162 574.3 406 68.0
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.4e-160 568.5 336 74.7
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 7.0e-158 561.2 345 78.6
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.5e-155 553.5 289 85.5
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.6e-154 550.1 289 84.4
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.1e-154 549.7 291 83.5
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.7e-154 548.5 397 69.0
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 4.0e-145 518.8 286 80.4
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.2e-145 518.5 334 68.0
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 5.4e-142 508.4 270 84.4
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.5e-128 463.8 306 74.2
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.4e-126 457.2 301 72.4
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.2e-122 444.1 285 69.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 6.2e-122 441.8 373 54.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.2e-119 433.3 313 68.7
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.2e-110 402.5 342 53.5
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.8e-97 360.5 322 53.4
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.7e-92 341.7 277 64.3
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.5e-88 329.3 332 47.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.4e-68 264.6 179 71.5
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.7e-66 257.7 139 81.3
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 9.4e-54 215.3 109 86.2
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.2e-53 214.9 119 81.5
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.7e-53 213.0 124 77.4
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.4e-49 200.7 137 65.7
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.3e-47 194.9 127 71.7
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.2e-33 147.1 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.2e-33 145.6 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.8e-28 131.3 80 71.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 9.8e-27 125.6 101 61.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.8e-20 104.8 114 49.1
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.4e-12 78.6 52 69.2
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 5.1e-07 60.1 129 36.4


User provided reference genes

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