Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 3.8e-31 137.5 67 100.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 3.3e-19 97.8 66 69.7
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 3.6e-18 94.4 65 63.1
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 3.1e-17 91.3 53 73.6
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 2.0e-16 88.6 63 66.7
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 5.8e-16 87.0 55 65.5
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 5.8e-16 87.0 55 65.5
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 7.6e-16 86.7 83 49.4
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 9.9e-16 86.3 55 65.5
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.9e-15 84.7 53 67.9
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 6.4e-15 83.6 61 63.9
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 6.4e-15 83.6 57 73.7
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 8.4e-15 83.2 61 62.3
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 1.1e-14 82.8 52 67.3
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 2.1e-13 78.6 59 64.4
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 4.6e-13 77.4 67 55.2
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 6.0e-13 77.0 60 60.0
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.3e-12 75.9 67 53.7
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 3.0e-12 74.7 52 61.5
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 3.9e-12 74.3 61 52.5
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 5.1e-12 73.9 58 60.3
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 8.7e-12 73.2 61 52.5
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.1e-11 72.8 61 57.4
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 1.5e-11 72.4 61 49.2
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.5e-11 72.4 57 52.6
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 1.9e-11 72.0 55 58.2
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.5e-11 71.6 61 55.7
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 2.5e-11 71.6 59 52.5
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 3.3e-11 71.2 61 57.4
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 4.3e-11 70.9 50 60.0
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 4.3e-11 70.9 65 49.2
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 4.3e-11 70.9 65 49.2
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 4.3e-11 70.9 65 47.7
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 5.6e-11 70.5 59 55.9
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 9.6e-11 69.7 65 47.7
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 9.6e-11 69.7 59 47.5
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 1.3e-10 69.3 59 57.6
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 1.3e-10 69.3 65 50.8
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.6e-10 68.9 60 60.0
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 1.6e-10 68.9 57 56.1
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 2.1e-10 68.6 61 52.5
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 2.1e-10 68.6 65 50.8
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 2.8e-10 68.2 66 48.5
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 2.8e-10 68.2 54 51.9
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 3.7e-10 67.8 62 53.2
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 3.7e-10 67.8 67 49.3
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 3.7e-10 67.8 55 52.7
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 6.2e-10 67.0 64 50.0
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 8.2e-10 66.6 65 50.8
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 8.2e-10 66.6 34 79.4
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.1e-09 66.2 59 54.2
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 1.1e-09 66.2 65 47.7
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 1.1e-09 66.2 65 47.7
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 1.1e-09 66.2 58 58.6
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 1.4e-09 65.9 65 47.7
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 1.8e-09 65.5 60 51.7
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 1.8e-09 65.5 64 48.4
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 1.8e-09 65.5 57 52.6
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 1.8e-09 65.5 57 52.6
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 1.8e-09 65.5 57 52.6
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.8e-09 65.5 66 47.0
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.8e-09 65.5 52 55.8
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 4.0e-09 64.3 46 60.9
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 5.3e-09 63.9 54 51.9
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 5.3e-09 63.9 64 46.9
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 5.3e-09 63.9 54 51.9
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 6.9e-09 63.5 57 52.6
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 6.9e-09 63.5 64 48.4
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 6.9e-09 63.5 60 53.3
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 9.0e-09 63.2 57 50.9
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 9.0e-09 63.2 46 58.7
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 1.5e-08 62.4 56 44.6
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 2.0e-08 62.0 57 50.9
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.0e-08 62.0 52 51.9
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 3.4e-08 61.2 51 52.9
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.0e-07 59.7 68 47.1
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.3e-07 59.3 64 48.4
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.3e-07 59.3 64 48.4
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 2.9e-07 58.2 64 46.9
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.9e-07 58.2 64 46.9
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.9e-07 58.2 64 46.9
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 2.9e-07 58.2 60 46.7
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 8.4e-07 56.6 38 55.3


User provided reference genes

Program Settings