Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 2.9e-57 225.3 141 100.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 6.7e-30 134.4 119 70.6
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 4.3e-29 131.7 118 67.8
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.2e-26 123.6 119 62.2
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.6e-23 113.2 71 74.6
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.3e-22 109.4 62 83.9
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 3.0e-22 109.0 84 69.0
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 3.9e-22 108.6 63 76.2
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.9e-22 108.6 63 79.4
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 5.1e-22 108.2 102 58.8
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 6.7e-22 107.8 68 79.4
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 8.8e-22 107.5 95 62.1
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.8e-22 107.5 106 56.6
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.1e-21 107.1 98 67.3
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.0e-21 106.3 70 77.1
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.6e-21 105.9 115 55.7
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.4e-21 105.1 68 70.6
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 4.4e-21 105.1 105 58.1
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.4e-21 105.1 131 52.7
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.3e-20 103.6 106 57.5
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.3e-20 103.6 106 57.5
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.3e-20 103.6 106 57.5
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.7e-20 103.2 120 50.8
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.7e-20 103.2 120 50.8
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.7e-20 103.2 120 50.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.2e-20 102.8 90 63.3
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.2e-20 102.8 101 56.4
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.8e-20 102.4 57 82.5
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.8e-20 101.7 92 57.6
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 6.3e-20 101.3 116 56.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 8.2e-20 100.9 116 53.4
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 8.2e-20 100.9 119 51.3
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 8.2e-20 100.9 119 51.3
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.4e-19 100.1 110 50.9
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 3.1e-19 99.0 180 41.1
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 5.3e-19 98.2 91 60.4
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 5.3e-19 98.2 127 49.6
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 6.9e-19 97.8 115 54.8
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 6.9e-19 97.8 112 52.7
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.5e-18 96.7 83 61.4
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 3.4e-18 95.5 65 70.8
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 3.4e-18 95.5 60 75.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.0e-17 94.0 119 49.6
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.2e-17 92.8 121 45.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.2e-17 92.8 57 73.7
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.8e-17 92.0 116 54.3
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.8e-17 92.0 116 54.3
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 3.8e-17 92.0 126 48.4
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 3.8e-17 92.0 112 56.2
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 3.8e-17 92.0 78 60.3
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.0e-17 91.7 112 48.2
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 5.0e-17 91.7 74 64.9
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.5e-17 90.9 109 49.5
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.9e-16 89.7 109 56.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.9e-16 89.7 57 73.7
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.9e-16 89.7 58 72.4
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.9e-16 89.7 58 72.4
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.9e-16 89.7 58 72.4
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.5e-16 89.4 133 44.4
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-16 89.4 92 53.3
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 7.2e-16 87.8 92 52.2
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 7.2e-16 87.8 47 85.1
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 9.4e-16 87.4 110 50.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 9.4e-16 87.4 107 55.1
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 9.4e-16 87.4 115 49.6
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.2e-15 87.0 102 54.9
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.2e-15 87.0 77 63.6
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.2e-15 87.0 116 47.4
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.1e-15 86.3 80 58.8
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.7e-15 85.9 120 50.0
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 7.9e-15 84.3 114 50.9
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.9e-15 84.3 57 70.2
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.9e-15 84.3 56 71.4
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 7.9e-15 84.3 56 71.4
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 7.9e-15 84.3 47 80.9
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.0e-14 84.0 100 54.0
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.4e-14 83.6 111 49.5
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.4e-14 83.6 44 84.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.4e-14 83.6 44 84.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.4e-14 83.6 44 84.1
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.4e-14 83.6 66 68.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.8e-14 83.2 95 53.7
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.3e-14 82.8 118 49.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 3.9e-14 82.0 103 48.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.2e-14 81.6 50 78.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 8.8e-14 80.9 58 70.7
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 8.8e-14 80.9 52 73.1
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.1e-13 80.5 115 52.2
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.5e-13 80.1 92 53.3
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 2.0e-13 79.7 79 55.7
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 7.4e-13 77.8 39 87.2
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 7.4e-13 77.8 95 49.5
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 9.7e-13 77.4 43 76.7
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 9.7e-13 77.4 53 71.7
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.7e-13 77.4 57 64.9
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 9.7e-13 77.4 114 45.6
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 9.7e-13 77.4 116 46.6
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.3e-12 77.0 41 82.9
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.7e-12 76.6 45 71.1
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.7e-12 76.6 98 51.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.7e-12 76.6 59 66.1
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.7e-12 76.6 47 74.5
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.2e-12 76.3 111 45.9
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.2e-12 76.3 40 85.0
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 2.8e-12 75.9 44 81.8
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.8e-12 75.9 133 42.1
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.8e-12 75.9 112 46.4
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 4.8e-12 75.1 55 65.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 4.8e-12 75.1 48 75.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 4.8e-12 75.1 44 77.3
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 4.8e-12 75.1 35 94.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 4.8e-12 75.1 87 54.0
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.1e-11 73.9 52 67.3
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.1e-11 73.9 57 66.7
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.8e-11 73.2 96 50.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.4e-11 72.8 92 51.1
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 3.1e-11 72.4 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 3.1e-11 72.4 35 91.4
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 4.1e-11 72.0 102 48.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 7.0e-11 71.2 91 49.5
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.6e-10 70.1 93 47.3
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.6e-10 70.1 91 46.2
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.6e-10 70.1 95 46.3
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.0e-10 69.7 104 48.1
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 2.6e-10 69.3 94 47.9
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 3.5e-10 68.9 52 59.6
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 3.5e-10 68.9 90 44.4
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.0e-09 67.4 55 60.0
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 1.0e-06 57.4 46 60.9
Oeu033500.1 Olea europaea HOM05D005853 ORTHO05D007308 4.0e-06 55.5 34 73.5


User provided reference genes

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