Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.8e-151 538.5 253 100.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.2e-125 453.4 253 80.6
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.5e-125 453.0 263 78.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.9e-123 446.0 249 80.7
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 2.7e-122 442.2 251 78.9
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.0e-121 438.7 256 77.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.9e-121 438.3 254 78.0
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 8.7e-121 437.2 244 78.3
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-120 436.8 250 77.6
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.9e-120 436.0 249 78.7
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 1.9e-120 436.0 241 80.1
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 3.3e-120 435.3 258 77.1
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 4.3e-120 434.9 234 81.2
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 8.1e-119 430.6 244 78.7
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.8e-118 429.5 232 81.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.4e-118 429.1 242 78.1
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 3.1e-118 428.7 252 77.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 6.9e-118 427.6 226 82.3
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 9.0e-118 427.2 251 76.1
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.2e-117 426.8 236 77.5
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.5e-117 426.4 226 81.9
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.5e-117 426.4 238 77.3
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.0e-117 426.0 245 78.0
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 2.0e-117 426.0 230 80.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.6e-117 425.6 238 78.6
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 2.6e-117 425.6 249 76.3
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.6e-117 425.6 244 77.5
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.4e-117 425.2 251 74.9
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 4.5e-117 424.9 235 79.6
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.9e-117 423.7 231 80.1
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.7e-116 422.9 236 77.1
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 2.2e-116 422.5 233 78.5
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.9e-116 422.2 233 79.8
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.1e-115 420.2 247 76.9
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.4e-115 419.9 241 76.8
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 5.4e-115 417.9 231 77.9
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.1e-115 417.5 244 75.4
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 7.1e-115 417.5 252 73.8
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 9.3e-115 417.2 248 74.2
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 9.3e-115 417.2 237 77.6
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.2e-114 416.8 257 70.8
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.2e-114 416.8 235 75.7
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.6e-114 416.4 229 78.2
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.1e-114 416.0 233 78.1
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.1e-114 416.0 243 74.9
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.7e-114 415.6 244 75.0
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 3.5e-114 415.2 255 70.6
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 3.5e-114 415.2 248 74.2
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 4.6e-114 414.8 255 71.0
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 4.6e-114 414.8 256 72.7
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 6.0e-114 414.5 235 76.6
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.9e-114 414.1 244 74.6
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 7.9e-114 414.1 253 73.1
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.0e-113 413.7 253 71.9
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.3e-113 413.3 243 74.5
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.3e-113 413.3 244 74.6
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.3e-113 413.3 244 76.6
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.3e-113 413.3 251 70.9
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 1.8e-113 412.9 248 73.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 3.0e-113 412.1 234 76.1
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 5.1e-113 411.4 226 79.6
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 6.7e-113 411.0 233 74.7
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 6.7e-113 411.0 234 75.6
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.5e-112 409.8 249 71.9
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.5e-112 409.8 245 73.1
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 1.5e-112 409.8 233 75.5
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 2.5e-112 409.1 250 70.0
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 3.3e-112 408.7 254 68.9
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 4.3e-112 408.3 250 69.6
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.3e-112 408.3 237 74.7
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 7.4e-112 407.5 249 69.5
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 7.4e-112 407.5 250 69.6
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 7.4e-112 407.5 250 69.6
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 9.6e-112 407.1 250 71.2
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.6e-111 406.4 226 77.0
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 2.1e-111 406.0 235 74.5
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.8e-111 405.6 232 74.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.8e-111 405.6 230 76.1
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 3.7e-111 405.2 248 71.0
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 4.8e-111 404.8 237 72.2
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.8e-111 404.8 235 74.5
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 4.8e-111 404.8 246 70.7
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 6.2e-111 404.4 235 74.0
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 8.1e-111 404.1 254 70.1
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.4e-110 403.3 235 74.5
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.8e-110 402.9 243 69.5
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.4e-110 402.5 228 75.4
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.4e-110 402.5 243 73.3
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.4e-110 402.5 254 70.5
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 3.1e-110 402.1 231 74.9
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 3.1e-110 402.1 243 69.5
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.1e-110 402.1 248 70.2
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 3.1e-110 402.1 232 74.6
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 4.0e-110 401.7 232 75.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 5.3e-110 401.4 232 73.3
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 5.3e-110 401.4 251 68.1
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 6.9e-110 401.0 248 70.2
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 6.9e-110 401.0 233 75.1
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.9e-110 401.0 228 74.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 6.9e-110 401.0 228 74.1
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 6.9e-110 401.0 243 72.8
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 9.0e-110 400.6 258 67.8
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 9.0e-110 400.6 237 70.5
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.2e-109 400.2 248 70.2
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.2e-109 400.2 248 70.2
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.2e-109 400.2 257 69.3
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.2e-109 400.2 258 67.8
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 1.5e-109 399.8 235 73.6
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.6e-109 399.1 224 75.0
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 3.4e-109 398.7 232 73.7
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.4e-109 398.7 237 72.6
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 5.8e-109 397.9 248 69.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 7.6e-109 397.5 228 74.6
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 9.9e-109 397.1 234 72.2
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 9.9e-109 397.1 242 71.1
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.2e-108 396.0 230 73.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.2e-108 396.0 244 71.3
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 2.9e-108 395.6 232 71.6
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 8.4e-108 394.0 244 72.5
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.4e-107 392.5 251 67.7
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 2.4e-107 392.5 226 74.3
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.2e-107 392.1 235 71.5
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 5.5e-107 391.3 250 68.8
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.6e-106 389.8 230 71.3
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.7e-106 389.0 228 72.4
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.9e-106 387.5 235 73.2
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 7.9e-106 387.5 226 74.8
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.0e-105 387.1 229 72.5
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.3e-105 386.7 228 71.9
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-105 386.3 226 73.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.9e-105 385.2 226 71.7
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 3.9e-105 385.2 246 69.1
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 3.9e-105 385.2 245 69.4
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.1e-105 384.8 226 73.9
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.1e-104 383.6 210 79.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.9e-104 382.9 229 73.4
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 4.3e-104 381.7 227 73.1
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 4.8e-103 378.3 245 68.6
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 4.8e-103 378.3 229 72.1
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.1e-102 377.1 228 70.6
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 4.0e-102 375.2 267 63.7
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 6.9e-102 374.4 230 69.6
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.1e-95 352.8 246 64.6
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.7e-95 352.1 245 63.7
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 8.2e-95 350.9 234 67.1
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 3.1e-94 349.0 215 72.6
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.7e-92 343.2 224 66.1
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.7e-92 343.2 250 64.4
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 2.1e-90 336.3 226 64.2
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 5.7e-88 328.2 244 59.0
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 7.2e-83 311.2 161 84.5
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 6.1e-82 308.1 236 60.6
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.8e-79 299.3 152 85.5
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.2e-77 293.9 161 81.4
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.5e-77 292.0 244 57.4
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 2.5e-59 233.0 167 59.3
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 3.5e-53 212.6 229 45.4
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 5.7e-48 195.3 216 49.5
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.6e-43 178.7 228 39.5
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 5.8e-40 168.7 89 85.4
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 2.6e-32 143.3 94 73.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 5.0e-28 129.0 116 55.2
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.3e-23 114.4 143 46.9
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 9.9e-16 88.2 51 70.6
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.7e-12 77.4 66 59.1


User provided reference genes

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