Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.7e-97 358.6 176 100.0
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 3.4e-92 341.7 176 92.6
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.2e-90 334.0 176 91.5
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 9.4e-90 333.6 176 90.9
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 2.7e-89 332.0 176 90.3
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 4.7e-89 331.3 176 90.9
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 4.7e-89 331.3 176 90.9
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 4.7e-89 331.3 176 90.9
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 6.1e-89 330.9 176 90.9
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 6.7e-88 327.4 168 93.5
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 8.8e-88 327.0 176 89.2
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 5.7e-87 324.3 176 89.2
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 3.7e-86 321.6 176 86.9
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.6e-84 316.2 176 85.2
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 2.2e-83 312.4 176 84.7
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 3.8e-83 311.6 166 89.8
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 8.5e-83 310.5 176 83.5
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 3.2e-82 308.5 167 88.0
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 8.0e-81 303.9 176 80.7
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.0e-80 303.5 170 84.1
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.4e-80 303.1 176 81.2
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.8e-80 302.8 176 82.4
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.3e-80 302.4 176 81.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 3.0e-80 302.0 177 81.4
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 4.0e-80 301.6 176 83.0
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 80.8
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 2.0e-79 299.3 176 80.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 5.7e-79 297.7 177 81.9
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 7.5e-79 297.4 177 80.2
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 2.2e-78 295.8 176 81.8
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.2e-78 295.8 164 86.0
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 3.7e-78 295.0 176 81.8
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 6.3e-78 294.3 172 80.2
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 8.2e-78 293.9 177 80.2
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.1e-77 293.5 177 81.4
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.4e-77 293.1 166 83.7
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 2.4e-77 292.4 179 79.3
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 3.1e-77 292.0 175 81.1
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.1e-77 291.6 176 80.7
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 7.0e-77 290.8 177 79.7
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 7.0e-77 290.8 176 80.1
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 9.1e-77 290.4 177 78.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 1.6e-76 289.7 176 80.1
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 2.0e-76 289.3 178 78.1
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.0e-76 289.3 176 78.4
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 2.7e-76 288.9 176 79.0
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.7e-76 288.9 176 79.5
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 3.5e-76 288.5 179 78.2
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 3.5e-76 288.5 177 79.1
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 4.5e-76 288.1 177 79.1
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 7.7e-76 287.3 181 79.0
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.7e-76 287.3 176 79.0
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.7e-76 287.3 176 79.0
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.9e-75 285.4 176 78.4
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 77.8
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 5.0e-75 284.6 176 77.8
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 5.0e-75 284.6 177 77.4
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 6.5e-75 284.3 167 80.2
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 6.5e-75 284.3 176 75.6
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.9e-74 282.7 176 78.4
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 3.2e-74 282.0 167 83.8
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 7.2e-74 280.8 176 76.1
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 9.4e-74 280.4 175 76.6
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 1.2e-73 280.0 176 76.7
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.6e-73 278.5 176 74.4
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 6.1e-73 277.7 176 77.3
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 8.0e-73 277.3 176 74.4
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 8.0e-73 277.3 177 75.7
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.0e-72 276.9 176 76.7
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.4e-72 276.6 161 84.5
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.4e-72 276.6 176 76.7
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.8e-72 276.2 176 73.9
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.8e-72 276.2 176 73.9
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.3e-72 275.8 175 74.9
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.0e-72 275.4 175 74.9
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 4.0e-72 275.0 175 74.9
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 5.2e-72 274.6 167 80.8
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.2e-72 274.6 175 74.3
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 6.8e-72 274.2 175 74.3
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 8.8e-72 273.9 167 79.6
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 8.8e-72 273.9 176 72.7
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.2e-71 273.5 183 75.4
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.2e-71 273.5 176 73.3
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.5e-71 273.1 177 74.0
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.5e-71 273.1 176 73.3
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.6e-71 272.3 168 78.6
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 4.4e-71 271.6 166 76.5
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.4e-71 271.6 170 74.7
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.4e-71 271.6 154 84.4
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.7e-71 271.2 171 77.2
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.7e-71 271.2 178 74.7
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 7.5e-71 270.8 166 77.7
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 9.8e-71 270.4 174 74.1
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.3e-70 270.0 176 72.2
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 6.3e-70 267.7 169 73.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 8.3e-70 267.3 174 72.4
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 1.1e-69 266.9 169 73.4
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 1.1e-69 266.9 169 73.4
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.1e-69 266.9 169 73.4
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.1e-69 266.9 176 73.3
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.1e-69 266.9 178 73.0
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.4e-69 266.5 228 61.4
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.4e-69 266.5 172 72.1
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.4e-69 265.8 169 72.8
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 5.4e-69 264.6 168 76.2
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 9.1e-69 263.8 174 73.0
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-68 263.5 171 73.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 1.6e-68 263.1 179 70.4
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.6e-68 263.1 172 70.9
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 2.0e-68 262.7 174 73.0
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.5e-68 261.9 176 72.2
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.5e-68 261.5 169 71.6
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 1.0e-67 260.4 164 74.4
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-67 260.0 167 74.3
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.3e-67 259.2 164 73.8
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.9e-67 258.8 167 73.7
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 3.8e-67 258.5 165 75.8
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 8.6e-67 257.3 177 69.5
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 8.6e-67 257.3 168 73.2
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.1e-66 256.9 175 70.3
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.9e-66 256.1 156 80.1
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 3.2e-66 255.4 177 69.5
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 4.0e-64 248.4 170 68.8
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 4.0e-64 248.4 158 74.1
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 6.8e-64 247.7 176 67.0
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.2e-63 246.9 177 65.0
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.2e-63 246.9 174 64.9
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 9.8e-63 243.8 169 69.8
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.3e-62 243.4 166 69.9
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 8.3e-62 240.7 157 72.0
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-61 240.0 123 92.7
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-61 240.0 123 92.7
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.4e-61 240.0 174 66.1
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.8e-61 239.6 175 65.1
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.3e-59 233.4 167 65.9
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.7e-54 216.5 167 63.5
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 6.4e-54 214.5 167 61.7
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.2e-53 212.2 124 82.3
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 5.9e-52 208.0 114 86.8
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.7e-51 206.5 123 78.0
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 5.0e-51 204.9 123 78.9
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 8.6e-51 204.1 138 71.0
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 5.8e-47 191.4 116 80.2
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 6.4e-46 188.0 191 49.2
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.3e-38 163.7 175 50.9
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-37 160.6 98 73.5
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.1e-37 158.7 105 70.5
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 5.4e-37 158.3 119 64.7
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.1e-37 157.9 102 72.5
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.4e-32 142.9 95 74.7
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 4.0e-24 115.5 108 57.4
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.2e-23 114.0 184 36.4
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 5.8e-23 111.7 58 82.8
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 9.3e-21 104.4 116 44.8
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 9.3e-21 104.4 174 36.8
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.1e-20 103.2 117 47.9
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.7e-20 102.8 141 40.4
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-19 97.8 97 53.6
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 4.9e-14 82.0 54 72.2
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.7e-12 76.3 48 70.8
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 3.5e-12 75.9 52 71.2
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-11 73.9 63 63.5
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.9e-11 72.4 50 68.0


User provided reference genes

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