Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1968.7 1016 100.0
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1505.0 1017 75.5
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1446.8 1022 74.2
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1437.9 1047 71.1
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1243.0 1022 67.5
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1240.3 991 66.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1233.8 1024 61.7
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1232.6 1017 63.5
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1230.3 1002 63.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1208.7 1053 60.1
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1204.9 1043 62.1
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1199.9 1023 61.4
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1196.8 1020 60.4
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1193.7 1015 60.1
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1187.9 1011 60.5
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1185.2 1017 60.0
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1184.1 1015 60.1
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1182.5 1013 61.3
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1179.9 1069 59.7
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1177.9 1020 59.5
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1177.2 1020 59.4
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1174.1 1020 59.9
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1169.5 1020 58.5
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1166.0 1012 59.8
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1164.8 1019 59.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1164.1 1023 60.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1163.7 1020 59.8
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1160.6 1012 60.5
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1157.1 1018 58.5
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1154.8 1021 58.7
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1154.4 1019 58.5
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1153.7 1017 59.0
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1152.9 1024 58.7
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1152.1 1014 58.4
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1149.8 1016 59.9
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1148.7 1015 59.0
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1148.7 1018 59.7
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1147.9 1027 59.8
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1146.0 1016 59.8
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1142.5 1021 58.5
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1141.7 1013 57.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1141.7 1023 58.7
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1139.4 1008 59.1
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1133.6 1021 57.3
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1133.2 1015 57.7
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1128.2 1014 57.3
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1114.0 1010 57.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1111.7 1009 57.2
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1111.3 1015 58.5
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1110.5 1020 58.3
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1105.1 1014 56.4
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1105.1 1002 57.9
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1104.0 1010 55.9
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1104.0 1010 56.9
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1102.8 1011 55.8
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1102.0 1015 56.0
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1099.7 993 57.0
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1097.4 1011 56.6
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1090.9 1018 56.5
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1088.9 1013 56.5
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1084.7 1007 55.9
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 1.2e-309 1066.6 1040 55.8
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 2.0e-309 1065.8 1049 54.7
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 5.8e-309 1064.3 901 60.6
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.3e-308 1063.1 1028 55.3
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 8.4e-308 1060.4 1011 54.4
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 1.1e-307 1060.1 1012 54.7
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 3.9e-305 1051.6 1023 54.4
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 1.5e-304 1049.7 1020 54.2
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 5.6e-304 1047.7 1016 54.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 2.7e-298 1028.9 1030 53.3
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 4.0e-294 1015.0 965 56.1
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 1.3e-292 1010.0 1023 52.9
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 6.7e-289 997.7 1021 53.2
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 1.1e-288 996.9 1021 53.3
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 3.3e-288 995.3 984 54.4
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 6.3e-287 991.1 1024 52.4
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 3.1e-286 988.8 1019 52.9
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 4.5e-285 984.9 1028 52.6
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.2e-284 982.6 898 56.3
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.2e-282 976.9 1033 50.1
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 2.7e-282 975.7 1041 52.0
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.9e-281 971.8 1005 52.8
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 7.4e-280 967.6 843 61.2
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 4.4e-272 941.8 1017 51.3
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 7.4e-272 941.0 1016 51.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.3e-271 940.3 1030 51.1
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 6.3e-271 937.9 968 52.4
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 5.9e-269 931.4 986 50.0
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.7e-265 917.9 1013 48.9
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.1e-246 857.4 769 59.7
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.8e-241 840.1 728 58.9
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 3.1e-225 786.2 1016 44.4
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.2e-197 694.5 677 56.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.3e-191 674.5 656 55.2
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.1e-190 671.4 656 55.0
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.5e-187 660.2 592 57.1
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.1e-171 608.2 614 54.7
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 7.4e-155 552.4 1078 34.4
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 5.3e-153 546.2 1106 35.1
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 6.9e-153 545.8 549 57.6
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 6.3e-146 522.7 347 76.9
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 5.5e-142 509.6 973 36.6
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 7.5e-139 499.2 528 52.5
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 7.0e-137 492.7 384 63.0
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.2e-101 375.6 1153 28.3
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.4e-97 361.3 1135 28.1
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.1e-93 348.2 441 44.0
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-82 312.4 328 51.2
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 4.6e-72 277.3 369 40.9
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 9.3e-65 253.1 266 50.8
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.9e-57 228.8 558 30.8
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.9e-49 202.2 216 51.9
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.7e-42 179.1 148 60.8
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.8e-42 177.9 227 46.3
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 2.9e-34 151.8 192 49.5
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.4e-31 142.9 149 47.0
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 3.7e-29 134.8 438 29.9
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.3e-29 134.0 79 77.2
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.2e-26 125.6 155 42.6
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.6e-24 119.4 219 36.1
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.1e-24 119.0 171 40.4
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 8.0e-24 117.1 103 56.3
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.4e-23 116.3 67 79.1
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.8e-23 115.9 130 49.2
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 3.8e-18 98.2 219 33.8
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 7.2e-17 94.0 126 40.5
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 2.8e-13 82.0 76 48.7
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.8e-13 82.0 101 43.6
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 2.8e-13 82.0 149 39.6
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 6.3e-13 80.9 75 56.0
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.4e-12 79.0 55 54.5
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.4e-12 79.0 55 54.5
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 9.1e-12 77.0 65 58.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.9e-09 69.3 65 55.4
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.6e-08 66.2 44 65.9
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 2.8e-08 65.5 233 26.2
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 4.4e-06 58.2 460 20.7


User provided reference genes

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