Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.5e-192 676.0 341 100.0
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.5e-152 543.1 337 78.6
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 7.0e-150 534.3 330 80.3
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.9e-131 473.0 363 68.9
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 2.1e-130 469.5 339 69.3
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 3.6e-130 468.8 341 67.4
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.3e-129 466.1 339 67.6
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 6.8e-129 464.5 344 66.6
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 6.8e-129 464.5 328 70.7
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.3e-127 460.3 340 68.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 9.2e-126 454.1 336 67.6
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 2.1e-125 453.0 325 70.5
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 4.6e-125 451.8 334 68.9
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.7e-124 449.9 343 68.2
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 1.7e-124 449.9 344 65.1
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 2.3e-124 449.5 342 65.8
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.1e-123 447.2 343 65.3
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.5e-123 446.8 344 64.5
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 4.3e-123 445.3 347 64.3
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 5.6e-123 444.9 342 65.2
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 6.2e-122 441.4 329 67.2
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.4e-121 439.5 339 65.8
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 5.2e-121 438.3 340 66.5
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.0e-120 436.4 321 68.8
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 2.0e-120 436.4 342 67.5
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.4e-120 435.6 340 66.5
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 2.2e-119 433.0 341 66.0
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 3.8e-119 432.2 338 63.6
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 3.8e-119 432.2 329 70.8
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 2.4e-118 429.5 339 65.2
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 3.2e-118 429.1 344 64.5
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 2.7e-117 426.0 321 67.9
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 3.5e-117 425.6 327 66.4
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 6.0e-117 424.9 346 66.2
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 7.8e-117 424.5 321 66.7
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 1.0e-116 424.1 344 62.5
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 1.7e-116 423.3 345 63.5
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.7e-116 423.3 341 63.9
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.7e-116 423.3 345 63.5
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 1.7e-116 423.3 345 63.5
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.7e-116 423.3 341 63.9
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.3e-116 422.9 321 68.2
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.3e-116 422.9 321 67.6
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.9e-116 422.2 326 67.5
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.9e-116 422.2 321 67.0
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 3.9e-116 422.2 346 63.3
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 5.1e-116 421.8 348 63.5
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.1e-115 420.6 340 63.2
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 3.3e-115 419.1 346 63.9
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 5.6e-115 418.3 334 64.4
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.3e-114 417.2 338 63.6
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.3e-114 417.2 333 64.6
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.6e-114 416.8 335 63.0
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.6e-114 416.8 337 62.3
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.1e-114 416.4 321 64.8
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 3.6e-114 415.6 330 65.5
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.1e-113 414.1 338 63.9
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.8e-113 413.3 321 65.7
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.1e-113 412.5 326 65.3
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.1e-113 412.5 326 65.3
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 6.9e-113 411.4 339 60.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 9.0e-113 411.0 316 67.7
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.0e-113 411.0 342 59.9
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 9.0e-113 411.0 328 62.5
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.5e-112 410.2 341 62.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.4e-112 408.7 316 63.0
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 9.9e-112 407.5 341 61.9
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-111 407.1 336 59.8
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 2.9e-111 406.0 252 76.2
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 3.8e-111 405.6 331 63.7
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.1e-110 404.1 333 63.4
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.9e-110 403.3 243 83.1
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.9e-110 403.3 340 61.8
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 2.1e-109 399.8 316 64.6
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-108 397.1 332 59.9
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.7e-108 396.7 340 61.2
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.3e-108 396.4 321 62.0
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.3e-108 396.4 329 63.2
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 4.3e-107 392.1 333 61.6
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 5.6e-107 391.7 336 62.5
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.9e-102 376.7 336 61.0
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.2e-102 375.9 344 57.0
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 5.5e-102 375.2 324 60.2
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.6e-101 373.6 331 58.3
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.7e-101 372.9 329 58.4
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.6e-101 372.1 372 56.2
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.6e-98 363.6 322 58.4
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.4e-97 359.8 316 60.1
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-93 347.1 268 66.4
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.6e-93 347.1 324 59.6
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 8.2e-90 334.7 233 66.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.1e-89 334.3 364 52.5
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.9e-88 328.6 239 64.9
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.4e-86 323.9 270 63.3
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.1e-85 320.1 230 66.1
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 3.6e-85 319.3 191 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 9.0e-81 304.7 282 55.0
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 2.2e-79 300.1 308 51.9
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.2e-78 295.8 281 53.4
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 6.3e-74 282.0 192 70.8
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.0e-68 263.1 329 49.5
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.1e-67 261.2 270 49.6
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 3.1e-65 253.1 292 43.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.0e-60 238.0 196 56.6
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 2.8e-58 229.9 228 49.6
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 1.9e-54 217.2 125 80.0
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.2e-53 214.5 316 42.4
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.1e-49 201.4 206 58.7
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.8e-49 200.7 209 53.1
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 3.5e-48 196.4 110 81.8
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 6.5e-47 192.2 123 66.7
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 6.1e-45 185.7 114 79.8
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 1.4e-41 174.5 182 50.0
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.2e-33 146.7 109 67.9
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 7.0e-33 145.6 270 37.4
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.2e-29 134.8 171 46.8
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.6e-29 133.3 148 50.0
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.7e-29 132.9 196 43.9
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 8.0e-29 132.1 99 64.6
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 2.6e-27 127.1 197 36.5
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.5e-22 110.5 98 59.2
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.8e-21 107.1 345 27.0
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 6.2e-21 105.9 56 76.8
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 6.8e-20 102.4 73 71.2
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 7.5e-19 99.0 62 67.7
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.1e-17 95.1 192 38.5
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.4e-17 94.7 62 79.0
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 4.6e-16 89.7 61 78.7
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-15 87.8 135 44.4
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.2e-13 81.6 80 56.2
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 1.4e-12 78.2 119 40.3
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 4.0e-12 76.6 185 31.9
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.4e-11 73.2 47 80.9
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 9.9e-11 72.0 62 64.5
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 3.8e-10 70.1 134 38.1
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.4e-09 68.2 49 67.3


User provided reference genes

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