Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 4.1e-237 824.7 538 100.0
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.0e-147 527.7 562 71.4
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.9e-143 511.9 547 69.7
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 8.3e-129 464.9 554 64.4
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.8e-128 463.8 549 61.6
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 9.4e-125 451.4 554 61.0
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 2.7e-124 449.9 548 62.8
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 6.8e-123 445.3 548 59.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.0e-122 443.7 551 61.2
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 6.3e-121 438.7 549 60.8
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.4e-120 436.8 551 62.6
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 4.1e-120 436.0 557 61.4
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 4.1e-120 436.0 553 59.3
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.0e-118 431.4 549 63.4
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 2.3e-118 430.3 548 58.6
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 2.3e-118 430.3 546 59.7
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 3.8e-118 429.5 554 59.6
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 5.0e-118 429.1 547 60.9
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 5.0e-118 429.1 546 57.3
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-116 424.5 535 59.6
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.6e-116 422.9 548 62.4
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.1e-116 422.2 551 59.3
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 6.1e-116 422.2 597 56.3
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.3e-115 420.2 552 62.5
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.0e-115 419.9 551 59.2
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 3.0e-115 419.9 543 62.4
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 6.8e-115 418.7 552 59.1
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 8.9e-115 418.3 546 58.8
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.0e-114 417.2 570 56.1
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 4.9e-113 412.5 557 59.4
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 4.9e-113 412.5 563 57.4
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.3e-113 411.8 545 62.9
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.8e-112 410.6 552 60.9
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.4e-112 410.2 544 61.0
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 5.4e-112 409.1 549 57.9
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 7.0e-112 408.7 558 54.3
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.2e-111 407.9 548 62.4
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.6e-111 407.5 547 60.5
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 3.5e-111 406.4 549 57.2
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.0e-110 404.8 548 57.8
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 2.9e-110 403.3 548 59.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 6.6e-110 402.1 567 60.0
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 6.6e-110 402.1 555 56.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 8.6e-110 401.7 544 59.7
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.9e-109 400.6 550 58.7
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 5.6e-109 399.1 553 56.6
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 7.3e-109 398.7 598 48.8
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 7.3e-109 398.7 556 58.8
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.2e-108 397.9 546 62.6
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.8e-108 396.7 546 62.8
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.8e-108 396.7 550 60.9
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.2e-108 395.6 547 59.0
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.0e-107 394.8 559 56.4
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 6.8e-107 392.1 551 63.7
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 2.6e-106 390.2 576 59.7
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.4e-106 389.4 546 60.3
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 7.5e-106 388.7 548 59.9
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.0e-104 382.1 558 55.4
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.2e-103 381.3 553 56.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 3.5e-103 379.8 554 57.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.6e-103 379.4 552 55.4
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 7.8e-103 378.6 555 56.6
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.0e-102 378.3 551 55.0
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.7e-102 377.5 551 57.0
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 5.0e-102 375.9 558 60.2
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-101 374.0 545 58.9
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.5e-101 373.6 550 59.8
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.6e-101 372.5 549 55.2
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.2e-100 371.3 553 59.5
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-100 370.9 543 61.9
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.8e-99 367.5 550 57.1
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 3.1e-99 366.7 555 56.8
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.2e-98 364.8 523 58.1
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 7.5e-98 362.1 553 57.3
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 7.5e-98 362.1 547 57.8
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.3e-97 361.3 546 55.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.3e-97 361.3 539 59.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 3.7e-97 359.8 553 59.7
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 6.4e-97 359.0 550 57.8
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 6.4e-97 359.0 553 56.6
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 7.8e-95 352.1 554 58.3
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 3.0e-94 350.1 551 59.5
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 3.0e-94 350.1 546 57.5
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.3e-93 346.7 578 52.9
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.5e-90 337.8 559 52.8
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.5e-90 337.8 551 56.4
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.5e-90 337.8 557 54.9
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.4e-88 331.3 545 57.1
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 7.1e-88 328.9 594 48.0
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 6.0e-87 325.9 564 57.3
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.0e-86 325.1 549 53.7
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 4.7e-84 316.2 545 52.1
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.8e-83 314.3 549 54.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.8e-83 312.4 548 50.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 2.0e-82 310.8 552 50.0
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 2.6e-82 310.5 383 52.0
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.7e-81 307.8 560 52.5
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 2.7e-79 300.4 554 50.0
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 3.5e-79 300.1 548 53.1
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.0e-78 298.5 495 54.5
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.3e-78 298.1 553 49.9
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 2.3e-78 297.4 583 46.5
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 2.5e-77 293.9 548 46.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.6e-76 291.2 558 50.9
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 3.1e-75 287.0 542 55.4
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 9.0e-75 285.4 556 49.1
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.8e-73 280.0 554 46.0
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.9e-73 279.6 166 86.1
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 6.4e-73 279.3 552 49.3
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 4.2e-72 276.6 567 47.8
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.6e-71 273.1 164 84.1
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.3e-70 271.6 179 79.3
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.3e-70 270.8 464 55.0
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 8.7e-70 268.9 155 90.3
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-69 268.1 185 77.8
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.5e-69 267.3 475 52.4
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 7.4e-69 265.8 587 47.7
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.2e-64 250.0 505 44.6
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 3.5e-63 246.9 590 47.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-57 228.4 486 51.6
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.5e-55 220.3 192 63.5
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.5e-50 204.9 160 70.0
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.6e-47 194.9 536 37.3
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 6.1e-47 193.0 432 48.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 2.3e-46 191.0 274 53.6
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.3e-45 187.2 330 52.4
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.7e-36 158.3 124 71.0
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.6e-31 141.7 282 44.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.4e-29 133.7 128 65.6
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 5.7e-29 133.3 135 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 6.3e-28 129.8 510 41.4
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.0e-25 122.5 81 72.8
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 3.8e-25 120.6 111 67.6
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 8.5e-25 119.4 108 64.8
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.5e-24 117.9 74 78.4
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.1e-23 113.2 115 65.2
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.4e-22 112.1 123 52.8
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 4.0e-22 110.5 110 63.6
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 8.8e-22 109.4 168 44.0
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-17 95.5 64 76.6
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.2e-16 90.5 108 57.4
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 5.5e-16 90.1 103 55.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 9.8e-13 79.3 86 54.7
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-11 75.5 58 74.1
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.8e-11 75.1 46 80.4
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 9.1e-11 72.8 75 62.7
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 9.1e-11 72.8 75 62.7
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 4.5e-10 70.5 77 58.4
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 4.2e-08 63.9 158 32.3
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.3e-06 58.2 115 48.7


User provided reference genes

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