Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 2.4e-92 342.0 163 100.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.6e-78 295.4 163 82.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.6e-78 295.4 163 82.2
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.8e-78 294.3 163 81.0
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.2e-77 292.4 163 81.6
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 2.9e-77 292.0 163 81.6
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 3.8e-77 291.6 163 81.0
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.9e-77 291.2 163 81.6
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.1e-76 290.0 163 80.4
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 4.2e-76 288.1 163 78.5
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 79.8
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 77.3
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.3e-74 282.3 163 79.8
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 3.0e-74 282.0 148 86.5
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 8.7e-74 280.4 163 76.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.5e-73 279.6 163 76.1
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 2.5e-73 278.9 163 76.1
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 3.3e-73 278.5 151 82.8
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 4.3e-73 278.1 163 77.3
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.3e-73 278.1 151 82.1
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 76.7
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.6e-72 276.2 163 74.8
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 76.1
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 76.1
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.8e-72 275.4 162 74.7
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 75.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 77.9
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 74.8
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 6.3e-72 274.2 163 78.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 75.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 8.2e-72 273.9 152 80.9
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 74.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 8.2e-72 273.9 152 82.2
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.2e-72 273.9 157 79.6
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.1e-71 273.5 163 75.5
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.8e-71 272.7 163 75.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.4e-71 272.3 152 81.6
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 2.4e-71 272.3 151 81.5
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 4.1e-71 271.6 163 76.1
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 5.3e-71 271.2 163 78.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 74.8
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 74.2
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 73.6
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 75.5
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 74.8
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.5e-70 269.6 147 83.7
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.5e-70 269.6 147 83.7
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 73.0
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 73.6
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.6e-70 268.9 162 73.5
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 74.8
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 74.8
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 4.5e-70 268.1 162 73.5
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 4.5e-70 268.1 153 77.1
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 5.9e-70 267.7 152 79.6
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.0e-69 266.9 153 77.8
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.0e-69 266.9 153 77.8
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 73.6
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 3.8e-69 265.0 148 79.1
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 74.2
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 3.8e-69 265.0 149 77.9
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.0e-69 264.6 162 73.5
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 6.5e-69 264.2 163 73.0
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.4e-68 263.1 159 73.0
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.5e-68 262.3 163 74.2
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 7.2e-68 260.8 153 75.2
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 7.2e-68 260.8 163 71.2
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-67 260.0 152 75.0
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.6e-67 259.6 163 70.6
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.1e-67 259.2 163 74.8
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 2.1e-67 259.2 148 77.0
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.6e-67 258.1 163 74.8
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 6.1e-67 257.7 142 81.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.8e-66 256.1 144 81.9
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.8e-66 256.1 163 74.2
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.3e-66 255.8 165 72.7
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.3e-66 255.8 165 72.7
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 3.0e-66 255.4 165 72.7
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.0e-66 255.4 163 73.6
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.9e-66 255.0 139 83.5
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 3.9e-66 255.0 165 72.7
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 6.7e-66 254.2 165 72.7
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-65 253.1 163 69.3
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 4.3e-65 251.5 163 70.6
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 7.4e-65 250.8 147 76.2
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 8.2e-64 247.3 147 75.5
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.8e-63 246.1 163 69.9
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.3e-63 244.6 152 71.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 9.1e-63 243.8 142 76.8
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-62 243.0 141 75.9
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 3.4e-62 241.9 164 68.3
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 4.5e-62 241.5 144 72.9
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 4.5e-62 241.5 144 72.9
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 4.5e-62 241.5 165 67.3
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 7.7e-62 240.7 165 68.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.7e-61 239.6 149 71.8
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.5e-61 237.7 136 77.2
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.4e-60 236.5 163 66.3
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 3.2e-60 235.3 163 66.3
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 4.2e-60 235.0 148 71.6
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 4.2e-60 235.0 164 65.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 7.2e-60 234.2 163 65.6
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 9.4e-60 233.8 165 66.7
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.2e-59 233.4 144 74.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 2.1e-59 232.6 163 66.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.7e-59 232.3 165 65.5
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.9e-58 228.4 139 73.4
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.1e-58 228.0 124 84.7
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 6.7e-58 227.6 142 69.7
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 8.8e-58 227.3 162 66.0
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 2.2e-56 222.6 136 72.1
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 3.7e-56 221.9 160 64.4
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 3.1e-55 218.8 146 66.4
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 4.5e-54 214.9 163 63.8
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 5.0e-53 211.5 162 64.2
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.6e-49 199.1 109 79.8
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 8.5e-45 184.1 160 51.2
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 7.2e-44 181.0 160 50.6
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 8.0e-43 177.6 163 56.4
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.0e-43 177.6 123 66.7
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.5e-41 173.3 128 62.5
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 3.1e-39 165.6 123 59.3
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.7e-38 162.5 149 52.3
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 5.9e-38 161.4 103 68.9
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.3e-37 160.2 176 51.1
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.2e-37 159.5 176 51.1
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 6.5e-37 157.9 164 47.6
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.9e-36 156.4 164 47.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 7.2e-36 154.5 123 59.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 6.1e-35 151.4 163 48.5
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.4e-34 150.2 97 69.1
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.4e-33 145.2 132 56.8
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 4.4e-33 145.2 164 47.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 6.3e-32 141.4 165 41.8
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 3.5e-30 135.6 90 68.9
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 9.5e-28 127.5 139 46.8
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.0e-22 109.8 67 74.6
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-17 94.0 62 71.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 8.3e-16 87.8 120 40.8
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 5.4e-15 85.1 53 69.8
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 9.5e-12 74.3 48 64.6
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 9.5e-12 74.3 62 59.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.6e-09 66.2 58 51.7
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 9.8e-09 64.3 46 58.7
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 4.1e-07 58.9 42 61.9


User provided reference genes

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