Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1412.5 697 100.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1300.0 697 90.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1269.2 698 88.1
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1250.0 696 86.4
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1245.3 698 86.4
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1238.0 696 85.3
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1234.6 694 85.6
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1229.9 696 85.5
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1228.8 718 85.0
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1228.4 696 85.1
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1228.4 696 85.3
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1226.1 698 84.1
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1224.2 694 84.0
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1219.5 696 84.9
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1217.2 695 83.3
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1209.1 695 83.5
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1204.1 696 82.9
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1202.2 695 81.4
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1199.5 698 82.4
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1196.8 695 81.9
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 695 81.6
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1192.6 695 81.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 691 82.1
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 692 81.6
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 695 82.2
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 745 79.1
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1185.2 696 82.0
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 696 81.3
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 695 80.7
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 695 81.2
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 695 81.4
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 698 79.5
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 692 79.6
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 695 79.3
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 691 81.5
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1167.5 700 79.0
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 692 80.3
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 691 81.3
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 696 79.6
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 692 80.6
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1156.4 696 79.0
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 695 78.7
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 691 80.5
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 695 78.8
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 695 80.1
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 693 80.1
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1151.3 696 79.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 694 79.4
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 695 79.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1148.3 673 81.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1148.3 694 78.7
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 691 79.3
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 691 79.9
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1147.1 720 77.9
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 695 78.7
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 694 79.3
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 695 78.7
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 694 78.4
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 695 78.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 698 77.9
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 695 77.3
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 695 77.8
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 695 79.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 700 77.1
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1136.3 693 79.1
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 696 78.2
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 694 76.4
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 695 78.7
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 695 78.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 694 76.4
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 695 77.8
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 696 79.0
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1118.6 695 75.0
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1117.1 693 78.4
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 691 75.4
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 719 76.6
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 691 78.1
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1113.2 696 75.0
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1111.7 691 78.7
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1110.5 696 75.0
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1110.5 694 75.2
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1108.6 694 75.6
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 694 74.9
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1107.4 694 74.2
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1101.3 647 80.2
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 741 74.4
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1097.0 687 74.2
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1094.0 695 75.7
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 693 75.6
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1083.6 695 76.5
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1078.5 713 71.4
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1077.4 679 77.5
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1075.1 679 77.3
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 3.6e-310 1067.8 696 74.9
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 5.8e-308 1060.4 698 75.1
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 7.5e-308 1060.1 624 81.2
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.9e-307 1057.4 669 74.9
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 4.0e-301 1037.7 698 72.6
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 2.9e-299 1031.6 695 72.8
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 9.5e-295 1016.5 703 70.0
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 3.9e-288 994.6 688 68.6
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.6e-287 990.7 582 80.4
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 9.9e-276 953.4 639 72.0
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 1.7e-259 899.4 540 79.4
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 4.2e-258 894.8 709 65.7
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 9.3e-250 867.1 581 70.7
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 2.4e-245 852.4 698 59.5
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 3.7e-238 828.6 539 75.0
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.2e-230 800.8 701 56.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.2e-230 800.8 701 56.2
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.7e-227 793.1 703 55.6
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 3.8e-227 792.0 700 56.4
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.4e-223 778.5 701 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 5.9e-220 768.1 712 54.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.4e-215 752.3 470 78.9
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.7e-182 642.5 386 79.8
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.9e-166 589.7 377 76.7
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 6.2e-161 572.0 723 44.1
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.1e-136 491.5 504 53.2
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 7.7e-111 405.6 763 36.2
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.8e-104 384.4 248 74.6
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 3.6e-100 370.2 323 59.1
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.8e-99 367.9 273 64.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 3.4e-98 363.6 825 32.4
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.9e-85 321.2 182 83.0
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.2e-74 285.4 247 59.1
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.4e-74 283.9 246 62.2
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.6e-71 275.0 183 72.7
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.0e-70 272.3 166 75.3
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 3.0e-62 244.2 617 31.4
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 5.6e-61 240.0 235 54.5
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.9e-49 201.1 125 73.6
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 4.3e-45 187.2 138 69.6
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.0e-42 178.3 145 65.5
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.9e-40 171.8 235 45.5
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 3.1e-35 154.5 95 76.8
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.1e-31 141.7 76 85.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.7e-31 141.4 75 86.7
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 5.3e-27 127.1 84 70.2
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 5.0e-17 94.0 86 57.0
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 4.2e-16 90.9 85 51.8
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.5e-13 82.4 50 78.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 4.3e-13 80.9 50 74.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 3.9e-06 57.8 33 75.8


User provided reference genes

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