Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 6342.7 3204 100.0
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 4635.9 3231 74.7
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 4603.5 3237 74.5
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 4092.0 2978 72.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3889.7 3281 63.3
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3735.7 3266 62.0
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3638.6 3293 60.2
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3627.8 3234 61.0
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3568.9 3072 62.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3520.3 3268 59.2
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3508.0 3282 58.8
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3503.4 3292 58.4
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3473.7 3251 58.8
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3466.4 3263 58.7
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3461.4 3385 57.0
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3444.4 3245 58.9
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3444.4 3259 58.1
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3426.7 3269 57.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3426.7 3269 57.9
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3407.5 3269 57.4
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3403.2 3298 57.7
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3402.1 3265 57.3
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3402.1 3269 57.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3402.1 3271 57.7
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3397.8 3277 57.3
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3390.5 3283 56.9
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3385.5 3277 57.2
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3382.0 3282 57.2
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3381.3 3289 57.1
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3374.3 3263 57.3
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3366.2 3341 56.1
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3362.8 3280 57.0
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3358.2 3308 56.6
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3335.4 3252 56.9
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3323.5 3222 56.9
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3263.8 3279 55.3
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3261.9 3270 55.8
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3249.5 3279 55.6
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3246.1 3271 55.3
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3239.1 3272 55.6
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3237.6 3274 55.2
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3236.0 3264 55.3
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3235.3 3292 55.0
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3219.5 3317 54.7
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3212.6 3289 55.5
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3201.8 3102 56.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3193.7 3310 54.4
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3180.6 2705 63.4
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3170.6 3255 54.5
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3147.5 3255 54.1
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3139.7 3262 53.8
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3139.4 3275 53.5
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3137.8 3261 54.3
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3134.0 3221 54.5
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3132.0 3253 54.5
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3125.5 3260 54.1
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3122.0 3261 54.0
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3119.7 3253 53.5
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3118.6 2912 58.5
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3116.3 3253 53.4
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3115.9 3273 53.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3107.4 3253 54.2
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3106.6 3263 54.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3103.2 3248 53.6
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3101.6 3248 53.6
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3097.4 3269 53.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3077.0 3259 53.6
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3072.0 3271 52.8
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3058.9 3324 52.9
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3052.3 3272 52.4
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3008.4 3273 52.8
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2997.2 3320 51.5
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2957.2 2430 63.5
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2812.7 2563 60.2
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2810.8 3115 52.3
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2810.4 3029 52.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2642.8 3272 48.0
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2595.5 2029 68.0
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2477.6 3261 45.3
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2377.8 2453 53.0
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2228.0 1602 73.0
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2087.8 1994 57.3
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2070.8 3179 41.4
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2068.5 1700 63.8
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2052.3 1506 71.9
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2007.6 1464 71.9
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1909.4 1790 59.7
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1888.2 2421 46.1
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1878.6 2843 41.9
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1877.1 1445 69.3
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1874.8 3341 37.7
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1853.2 2443 45.4
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1820.8 3369 37.0
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1746.1 3511 35.4
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1473.0 1729 49.0
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1458.7 1005 74.2
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1430.6 2167 42.3
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1241.5 1255 54.0
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1239.6 1552 47.4
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1199.1 1023 62.5
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1176.0 841 71.2
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1156.0 977 63.9
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1115.5 833 69.3
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 3.7e-301 1040.0 1546 41.3
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.7e-299 1033.9 973 58.4
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.1e-296 1024.2 852 62.4
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 5.4e-292 1009.6 1137 52.3
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 5.4e-276 956.4 3355 26.9
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 8.1e-264 916.0 1284 43.5
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 7.1e-252 876.3 1494 39.2
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 1.1e-233 815.8 1478 37.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.4e-228 798.1 748 57.8
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.6e-222 776.5 894 49.4
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.4e-202 712.6 412 87.6
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.2e-196 691.4 441 78.0
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 2.6e-153 548.9 453 62.5
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 7.8e-142 510.8 645 45.6
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 6.6e-141 507.7 844 39.1
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 3.5e-134 485.3 643 45.3
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 2.6e-129 469.2 797 38.3
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.1e-127 463.8 800 37.8
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.9e-124 453.0 830 37.2
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.9e-124 453.0 813 36.8
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 7.6e-121 441.0 327 68.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.9e-116 426.4 270 76.7
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.6e-115 423.3 804 36.3
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.9e-114 417.9 250 80.4
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.1e-111 410.6 945 34.7
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 6.5e-104 384.8 415 50.8
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 2.1e-102 379.8 525 46.1
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 2.1e-102 379.8 568 44.5
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 8.7e-101 374.4 410 50.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-98 367.5 301 62.1
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 6.3e-91 341.7 360 54.2
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.1e-90 340.9 217 82.0
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.1e-86 326.6 244 64.8
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-80 307.0 560 36.8
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 2.5e-79 303.1 818 28.5
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.2e-79 302.4 311 54.3
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 6.7e-77 295.0 246 58.5
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 7.7e-73 281.6 351 45.3
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.6e-70 272.7 883 28.0
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-68 266.9 323 46.7
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 6.5e-64 251.9 297 49.8
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.4e-61 244.2 963 26.9
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.1e-54 220.3 718 26.5
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.5e-52 214.2 783 25.4
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-51 210.7 322 40.4
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 8.6e-48 198.4 740 27.2
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.2e-46 194.5 388 33.8
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 4.7e-46 192.6 156 63.5
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 1.0e-40 174.9 193 52.3
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 6.4e-35 155.6 118 67.8
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.0e-29 136.3 82 81.7
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.0e-24 121.7 97 64.9
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.0e-24 121.7 111 58.6
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 5.1e-24 119.4 117 56.4
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.4e-21 111.3 86 65.1
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 9.9e-20 105.1 110 54.5
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 2.1e-17 97.4 70 68.6
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 3.5e-17 96.7 69 72.5
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.5e-17 96.7 127 49.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 4.6e-17 96.3 118 52.5
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 6.6e-16 92.4 93 54.8
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 7.1e-10 72.4 68 52.9
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 3.5e-09 70.1 45 73.3
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.5e-07 63.9 47 66.0
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 4.3e-07 63.2 59 55.9
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 9.6e-07 62.0 140 28.6


User provided reference genes

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