Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 2.5e-234 815.1 407 100.0
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.5e-95 352.8 458 47.4
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.2e-94 350.1 497 45.1
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 5.0e-86 322.4 513 43.1
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 2.1e-68 263.8 415 44.1
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 2.1e-68 263.8 415 44.1
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 2.6e-58 230.3 426 39.7
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 3.2e-56 223.4 423 37.1
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 4.6e-47 193.0 413 34.6
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.3e-46 190.7 440 33.2
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 4.3e-45 186.4 413 34.4
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 7.3e-45 185.7 413 34.1
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 9.6e-45 185.3 439 34.2
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 8.1e-44 182.2 435 34.9
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 2.6e-42 177.2 427 34.2
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 2.9e-41 173.7 411 33.6
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 5.4e-40 169.5 439 31.9
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.7e-38 164.5 415 32.5
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.5e-37 161.4 403 34.0
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.1e-36 157.5 401 34.2
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.9e-33 147.1 300 34.3
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 8.4e-33 145.6 306 34.0
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 2.7e-31 140.6 414 31.4
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 3.5e-31 140.2 409 31.5
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.6e-31 139.8 164 47.0
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 6.0e-31 139.4 164 47.6
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 7.8e-31 139.0 175 44.6
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 1.0e-30 138.7 210 43.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.3e-30 138.3 154 49.4
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.3e-30 138.3 440 30.2
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 2.3e-30 137.5 154 49.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 3.0e-30 137.1 420 31.0
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.1e-30 136.3 177 43.5
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 5.1e-30 136.3 158 46.2
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 6.6e-30 136.0 196 41.8
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 8.7e-30 135.6 175 45.7
SGA_v2.0_scaffold34G13602 Striga asiatica HOM05D005306 ORTHO05D006158 2.5e-29 134.0 420 30.7
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 9.6e-29 132.1 395 29.9
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.6e-28 131.3 158 44.9
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.8e-28 129.8 308 32.8
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.8e-28 129.8 308 32.8
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.4e-27 128.3 420 29.3
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.8e-27 127.9 420 28.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.0e-27 126.7 207 42.0
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 9.0e-27 125.6 164 42.1
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 9.0e-27 125.6 392 29.8
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.2e-26 125.2 188 42.6
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.6e-26 124.0 169 40.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 3.4e-26 123.6 169 40.8
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.4e-26 123.6 164 43.3
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 7.6e-26 122.5 164 43.3
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.3e-25 121.7 422 29.1
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.7e-25 121.3 197 39.6
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.7e-25 121.3 417 29.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.7e-25 121.3 418 30.9
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.9e-25 120.6 307 30.6
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 4.9e-25 119.8 161 44.1
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 4.9e-25 119.8 268 36.6
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 4.9e-25 119.8 172 40.1
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 8.4e-25 119.0 136 50.0
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.4e-25 119.0 312 30.4
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.2e-24 116.7 168 41.1
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.4e-24 116.3 112 53.6
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 7.1e-24 115.9 231 37.7
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.6e-23 114.8 307 31.3
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.6e-23 114.8 227 37.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.1e-23 114.4 241 34.4
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 2.1e-23 114.4 203 39.4
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.7e-23 114.0 135 47.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.5e-23 113.6 135 47.4
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 3.5e-23 113.6 187 39.0
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 4.6e-23 113.2 173 44.5
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 4.6e-23 113.2 173 44.5
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 4.6e-23 113.2 400 27.8
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 6.0e-23 112.8 173 44.5
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 6.0e-23 112.8 173 44.5
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 6.0e-23 112.8 135 47.4
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 7.9e-23 112.5 128 47.7
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.3e-22 111.7 400 29.2
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.8e-22 111.3 224 34.8
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.3e-22 110.9 223 36.3
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.3e-22 110.9 411 28.5
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 2.3e-22 110.9 131 46.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.0e-22 110.5 425 28.9
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.9e-22 110.2 313 29.7
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 5.1e-22 109.8 148 41.9
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 1.5e-21 108.2 143 44.1
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.9e-21 107.8 165 41.8
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.9e-21 107.8 141 44.7
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.9e-21 107.8 114 47.4
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 3.3e-21 107.1 161 41.0
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 3.3e-21 107.1 114 47.4
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 3.3e-21 107.1 189 37.0
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 5.6e-21 106.3 143 42.7
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 5.6e-21 106.3 112 50.0
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 5.6e-21 106.3 121 47.9
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 7.4e-21 105.9 153 41.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.6e-20 104.8 221 31.7
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.1e-20 104.4 241 32.0
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.1e-20 104.4 221 34.4
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.8e-20 104.0 423 30.7
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 4.8e-20 103.2 238 32.4
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 4.8e-20 103.2 238 32.4
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 4.8e-20 103.2 238 32.4
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 6.2e-20 102.8 240 33.3
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.4e-19 100.9 130 41.5
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 6.9e-19 99.4 230 33.5
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.9e-19 99.4 148 37.2
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 6.9e-19 99.4 239 34.7
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 9.0e-19 99.0 227 31.7
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.2e-18 98.6 220 31.4
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.0e-18 97.8 289 29.1
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.4e-18 97.1 112 48.2
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.5e-18 96.7 308 27.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.0e-17 95.5 420 26.4
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 1.7e-17 94.7 114 44.7
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 3.8e-17 93.6 114 43.9
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.4e-16 91.7 138 41.3
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.9e-16 91.3 124 42.7
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.9e-16 91.3 250 30.4
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.9e-16 91.3 250 30.4
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 3.2e-16 90.5 196 31.1
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 2.1e-15 87.8 112 42.9
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.1e-13 82.0 118 39.8
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.6e-12 78.2 167 32.9
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.8e-12 77.4 98 43.9
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 4.8e-12 76.6 159 33.3
unitig_699.g19586 Utricularia gibba HOM05D033148 ORTHO05D006158 1.1e-11 75.5 148 38.5
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.8e-11 74.7 76 52.6
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.4e-11 74.3 112 39.3
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.2e-09 67.8 119 33.6
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.1e-08 65.5 240 25.8
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.6e-07 61.6 151 30.5
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.6e-07 61.6 189 27.5
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.5e-07 60.5 80 46.2
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 3.0e-06 57.4 117 32.5


User provided reference genes

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