Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.8e-108 396.0 209 100.0
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 6.4e-37 158.3 214 44.9
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 2.4e-36 156.4 226 44.2
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-35 153.3 212 43.4
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 7.8e-35 151.4 215 42.8
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 7.8e-35 151.4 215 42.8
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.3e-34 149.8 215 41.9
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 2.3e-34 149.8 215 42.3
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-34 149.1 215 42.3
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-34 149.1 215 42.3
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 5.1e-34 148.7 215 43.3
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.6e-34 148.3 223 39.5
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.1e-32 143.3 217 41.0
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 2.1e-32 143.3 210 41.0
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-31 141.0 201 39.8
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-31 141.0 201 39.8
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.8e-31 140.2 207 40.1
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 2.4e-31 139.8 221 39.4
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.1e-31 139.4 225 39.1
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.0e-31 139.0 225 38.7
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.5e-30 137.1 223 37.7
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 1.5e-30 137.1 210 40.5
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 2.0e-30 136.7 208 39.9
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 2.6e-30 136.3 214 41.1
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.4e-30 136.0 202 39.1
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 4.5e-30 135.6 206 41.3
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 5.8e-30 135.2 222 38.7
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.6e-30 134.8 225 38.2
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.7e-29 133.7 213 37.6
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 1.1e-28 131.0 210 38.1
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.4e-28 130.6 210 41.4
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 3.5e-27 125.9 225 40.0
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 3.5e-27 125.9 221 36.2
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.6e-27 125.6 213 38.0
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 4.6e-27 125.6 213 36.6
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 7.9e-27 124.8 205 38.5
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 7.9e-27 124.8 212 38.2
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.9e-27 124.8 215 37.7
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.0e-26 124.4 211 38.4
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.0e-26 124.4 211 38.4
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.0e-26 124.4 213 38.0
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.3e-26 124.0 222 36.9
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.3e-26 124.0 213 38.0
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.3e-26 124.0 217 38.2
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.8e-26 123.6 218 37.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 3.0e-26 122.9 236 38.1
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 6.7e-26 121.7 215 39.1
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 6.7e-26 121.7 211 38.4
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 6.7e-26 121.7 217 36.9
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 8.7e-26 121.3 211 38.4
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.5e-25 120.6 217 37.3
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.5e-25 120.6 221 38.9
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.5e-25 120.6 210 38.6
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.9e-25 120.2 212 36.8
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 2.5e-25 119.8 173 41.0
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.5e-25 119.8 225 36.4
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 3.3e-25 119.4 222 35.1
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.3e-25 119.4 215 34.9
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.3e-25 119.4 224 35.7
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.3e-25 119.4 221 34.4
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.3e-25 119.4 213 37.6
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 5.6e-25 118.6 216 34.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 5.6e-25 118.6 216 34.3
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.6e-25 118.6 215 38.6
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 7.4e-25 118.2 238 39.5
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 7.4e-25 118.2 238 39.5
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 9.6e-25 117.9 218 35.8
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.6e-24 117.1 214 36.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.1e-24 116.7 218 37.2
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.1e-24 116.7 135 43.7
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.1e-24 116.7 135 43.7
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.1e-24 116.7 219 37.0
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.8e-24 116.3 215 36.7
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 3.7e-24 115.9 211 36.0
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 4.8e-24 115.5 211 39.3
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 8.1e-24 114.8 212 38.2
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 1.1e-23 114.4 200 36.5
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 1.4e-23 114.0 225 36.0
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 1.8e-23 113.6 198 31.3
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 2.4e-23 113.2 198 32.3
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 2.4e-23 113.2 198 32.3
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 3.1e-23 112.8 213 38.5
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 3.1e-23 112.8 215 39.1
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 6.9e-23 111.7 211 33.2
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.2e-22 110.9 201 32.3
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.2e-22 110.9 216 35.2
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.2e-22 110.9 224 37.1
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 2.0e-22 110.2 220 38.6
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.0e-22 110.2 201 33.8
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 2.6e-22 109.8 185 37.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 2.6e-22 109.8 200 33.5
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 2.6e-22 109.8 185 39.5
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.5e-22 109.0 199 32.7
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.8e-22 108.6 178 37.6
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 5.8e-22 108.6 229 36.7
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 5.8e-22 108.6 226 36.3
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.3e-21 107.5 211 31.8
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.3e-21 107.5 218 33.5
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.3e-21 107.5 219 33.8
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 1.7e-21 107.1 210 32.4
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 1.7e-21 107.1 210 32.4
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 1.7e-21 107.1 210 32.4
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.7e-21 107.1 198 31.3
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.7e-21 107.1 198 31.3
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.7e-21 107.1 216 33.3
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.7e-21 107.1 205 35.1
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 2.9e-21 106.3 216 34.7
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.4e-21 104.8 207 35.7
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 8.4e-21 104.8 213 34.7
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.1e-20 104.4 211 32.2
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 1.4e-20 104.0 214 36.9
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.9e-20 103.6 205 33.7
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.9e-20 103.6 213 32.9
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.5e-20 103.2 220 35.0
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 3.2e-20 102.8 189 36.0
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 4.2e-20 102.4 194 35.1
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 5.5e-20 102.1 201 31.3
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.5e-20 102.1 220 34.5
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 5.5e-20 102.1 207 32.9
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 7.1e-20 101.7 218 34.4
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 7.1e-20 101.7 212 32.1
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 9.3e-20 101.3 211 31.3
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 9.3e-20 101.3 220 34.5
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 9.3e-20 101.3 196 31.1
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.2e-19 100.9 200 31.5
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.2e-19 100.9 214 32.2
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.2e-19 100.9 219 32.9
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.6e-19 100.5 215 33.0
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.6e-19 100.5 212 33.0
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 2.1e-19 100.1 218 32.1
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 2.1e-19 100.1 212 33.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 2.7e-19 99.8 212 32.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 2.7e-19 99.8 221 31.2
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 3.5e-19 99.4 212 32.5
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 7.9e-19 98.2 216 34.3
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.0e-18 97.8 215 33.5
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.0e-18 97.8 221 31.7
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.3e-18 96.7 142 38.0
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 3.9e-18 95.9 206 31.6
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.1e-17 94.4 212 29.7
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-17 94.4 125 42.4
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.5e-17 94.0 214 33.2
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 1.9e-17 93.6 144 41.0
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.9e-17 93.6 216 31.5
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 3.3e-17 92.8 209 32.1
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 3.3e-17 92.8 215 31.2
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 4.3e-17 92.4 215 31.6
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 4.3e-17 92.4 217 32.7
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 4.3e-17 92.4 212 31.1
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.3e-17 92.4 122 40.2
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 5.7e-17 92.0 212 31.6
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 5.7e-17 92.0 214 32.7
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 7.4e-17 91.7 218 32.1
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 9.6e-17 91.3 194 36.6
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 2.1e-16 90.1 223 30.9
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 2.8e-16 89.7 212 32.1
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 2.8e-16 89.7 214 32.2
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 4.8e-16 89.0 220 31.8
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.1e-15 87.8 172 32.0
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 1.1e-15 87.8 223 29.1
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.8e-15 87.0 141 40.4
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.4e-15 86.7 219 32.9
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.4e-15 86.7 209 33.0
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.3e-15 85.5 213 31.5
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.2e-14 84.3 96 41.7
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 1.5e-14 84.0 221 29.4
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.8e-13 79.3 137 38.0
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.9e-12 77.0 173 31.2
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.9e-11 71.6 139 33.8
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.9e-11 71.6 139 34.5
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 3.0e-10 69.7 129 33.3
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 3.9e-10 69.3 132 34.8
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 3.9e-10 69.3 199 29.6
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 5.1e-10 68.9 138 34.8
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-09 67.8 66 42.4
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 7.4e-09 65.1 94 41.5
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 1.6e-08 63.9 121 33.9
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 6.3e-08 62.0 95 41.1


User provided reference genes

Program Settings