Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.6e-161 572.8 305 100.0
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.7e-99 366.7 314 67.5
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.9e-99 365.5 314 67.2
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 3.2e-93 345.9 299 67.6
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 4.1e-85 318.9 317 62.8
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 5.6e-82 308.5 321 58.3
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.6e-68 263.8 311 55.3
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.9e-67 259.2 307 53.7
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 5.8e-63 245.4 374 46.5
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.9e-62 242.3 271 57.6
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.2e-60 237.7 234 60.7
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 2.7e-60 236.5 297 53.2
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.0e-59 234.6 295 50.8
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.5e-58 230.7 430 40.5
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.2e-55 221.1 238 57.6
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 9.3e-53 211.5 323 48.0
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.2e-52 211.1 324 47.2
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.6e-52 210.7 265 52.5
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.6e-52 210.7 320 45.3
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.6e-52 210.7 321 46.7
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.7e-52 209.9 231 56.7
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 3.5e-52 209.5 207 61.4
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 3.5e-52 209.5 207 61.4
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 7.9e-52 208.4 291 50.2
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 7.9e-52 208.4 282 49.6
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.0e-51 208.0 323 48.6
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.3e-51 206.8 239 55.2
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 5.1e-51 205.7 208 59.6
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 6.7e-51 205.3 254 53.9
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 8.7e-51 204.9 278 49.6
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 8.7e-51 204.9 290 47.2
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 8.7e-51 204.9 238 53.8
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.1e-50 204.5 256 52.7
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 5.7e-50 202.2 322 48.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 5.7e-50 202.2 308 45.5
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 7.4e-50 201.8 197 59.9
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.6e-49 200.7 242 52.9
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.1e-49 200.3 275 47.3
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.8e-49 199.9 206 58.3
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 4.8e-49 199.1 216 56.9
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.1e-48 198.0 247 52.2
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.4e-48 197.6 232 54.7
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.4e-48 197.6 309 44.7
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.8e-48 197.2 297 48.5
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 4.1e-48 196.1 236 53.0
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 5.3e-48 195.7 222 57.7
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 5.3e-48 195.7 208 57.7
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 9.0e-48 194.9 301 48.2
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 9.0e-48 194.9 264 50.8
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.6e-47 193.4 199 58.3
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 4.5e-47 192.6 301 47.5
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.3e-46 191.0 208 54.8
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.7e-46 190.7 264 48.1
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 3.8e-46 189.5 229 50.7
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 3.2e-45 186.4 206 54.9
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 3.2e-45 186.4 217 52.5
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 5.5e-45 185.7 204 54.9
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 5.5e-45 185.7 293 47.8
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.2e-45 185.3 204 58.3
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 9.3e-45 184.9 261 47.9
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.1e-44 183.7 191 57.6
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.7e-44 183.3 165 63.0
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 3.6e-44 183.0 141 73.8
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 3.6e-44 183.0 214 52.3
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 4.6e-44 182.6 193 60.6
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 6.1e-44 182.2 196 55.1
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 6.1e-44 182.2 193 60.1
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.0e-43 181.4 203 57.6
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.0e-43 181.4 203 57.6
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.3e-43 181.0 275 48.7
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.8e-43 180.6 191 56.0
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 2.3e-43 180.3 203 57.6
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 3.9e-43 179.5 188 59.6
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 5.1e-43 179.1 193 56.5
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.7e-43 178.7 186 58.1
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 8.7e-43 178.3 270 47.4
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.1e-42 177.9 215 54.9
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.9e-42 177.2 255 49.4
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.5e-42 176.8 259 47.9
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 3.3e-42 176.4 211 55.0
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 7.4e-42 175.3 237 49.4
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 7.4e-42 175.3 212 52.8
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 7.4e-42 175.3 259 47.5
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 7.4e-42 175.3 200 56.0
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 9.7e-42 174.9 270 46.3
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.3e-41 174.5 212 52.8
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.3e-41 174.5 241 49.0
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.7e-41 174.1 255 48.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 2.2e-41 173.7 212 52.8
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.8e-41 173.3 191 55.0
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.8e-41 173.3 250 48.0
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.7e-41 172.9 188 55.9
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 4.8e-41 172.6 209 51.2
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 4.8e-41 172.6 209 51.2
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 6.3e-41 172.2 263 44.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.8e-40 170.6 271 47.2
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 5.3e-40 169.1 277 45.1
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 6.9e-40 168.7 283 43.8
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.2e-39 167.9 190 55.3
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.6e-39 166.8 218 51.8
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 3.4e-39 166.4 277 45.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 7.7e-39 165.2 191 54.5
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.4e-37 161.0 240 46.7
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-37 161.0 268 45.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 2.5e-37 160.2 249 46.2
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 5.5e-37 159.1 170 55.9
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 6.1e-36 155.6 222 49.5
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 6.1e-36 155.6 138 63.8
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.8e-35 154.1 191 50.8
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.9e-35 152.9 215 48.4
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 8.8e-35 151.8 188 50.5
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.5e-34 151.0 155 57.4
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.0e-34 150.6 168 54.8
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 5.7e-34 149.1 123 66.7
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.7e-33 147.5 270 42.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.8e-32 144.1 107 72.9
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.8e-32 144.1 164 50.6
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.8e-32 144.1 270 41.1
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 4.1e-32 142.9 107 77.6
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 6.9e-32 142.1 150 56.0
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 6.9e-32 142.1 163 54.6
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 9.1e-32 141.7 235 45.1
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.8e-30 136.3 275 38.5
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.8e-30 136.3 194 46.9
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 7.2e-29 132.1 352 34.7
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 8.8e-27 125.2 247 38.5
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 4.4e-26 122.9 193 47.2
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 6.3e-25 119.0 86 74.4
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 2.4e-24 117.1 217 41.9
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.3e-22 111.3 144 50.0
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 8.5e-22 108.6 110 59.1
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.5e-21 107.8 237 40.1
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 3.6e-20 103.2 148 47.3
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.5e-18 97.8 91 64.8
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.3e-18 96.7 143 42.0
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 3.1e-16 90.1 127 45.7
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 9.1e-16 88.6 61 78.7
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.6e-15 87.8 98 52.0
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.0e-15 87.4 93 58.1
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.7e-15 87.0 105 43.8
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.5e-13 80.5 109 52.3
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.1e-12 77.4 135 40.0
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.0e-11 75.1 138 39.9
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.8e-11 74.3 46 87.0
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.0e-11 73.2 108 50.0
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.0e-11 73.2 82 48.8
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.5e-10 71.2 50 82.0
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.5e-07 60.1 85 40.0
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.7e-07 58.9 203 32.5


User provided reference genes

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