Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 6.0e-45 183.7 88 100.0
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.9e-37 156.8 88 83.0
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.9e-37 156.8 88 83.0
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.0e-36 156.4 89 86.5
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-36 155.6 88 83.0
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 2.5e-35 151.8 85 83.5
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.5e-35 151.8 85 83.5
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 5.6e-35 150.6 78 89.7
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 5.6e-35 150.6 78 89.7
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 5.6e-35 150.6 82 84.1
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 5.6e-35 150.6 85 82.4
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 5.6e-35 150.6 82 85.4
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 9.6e-35 149.8 82 84.1
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.3e-34 149.4 82 82.9
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.3e-34 149.4 82 82.9
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 87 81.6
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 87 81.6
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.6e-34 149.1 93 80.6
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.6e-34 149.1 82 82.9
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 2.8e-34 148.3 78 88.5
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 2.8e-34 148.3 82 84.1
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 3.7e-34 147.9 93 77.4
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.7e-34 147.9 88 79.5
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 3.7e-34 147.9 78 85.9
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 3.7e-34 147.9 78 85.9
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 4.8e-34 147.5 93 78.5
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 4.8e-34 147.5 88 79.5
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.8e-34 147.5 88 79.5
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.8e-34 147.5 88 79.5
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.8e-34 147.5 88 79.5
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 4.8e-34 147.5 89 77.5
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 6.2e-34 147.1 93 76.3
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.2e-34 147.1 88 79.5
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 6.2e-34 147.1 78 87.2
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 6.2e-34 147.1 93 77.4
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 6.2e-34 147.1 82 81.7
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 8.1e-34 146.7 82 84.1
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.1e-34 146.7 82 81.7
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 8.1e-34 146.7 82 84.1
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 8.1e-34 146.7 93 77.4
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 8.1e-34 146.7 93 77.4
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 8.1e-34 146.7 93 77.4
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 1.1e-33 146.4 85 81.2
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.1e-33 146.4 93 76.3
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 1.4e-33 146.0 88 78.4
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 1.4e-33 146.0 82 82.9
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.8e-33 145.6 93 77.4
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.8e-33 145.6 93 77.4
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.8e-33 145.6 93 77.4
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 2.4e-33 145.2 93 76.3
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.4e-33 145.2 93 76.3
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 2.4e-33 145.2 85 80.0
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.4e-33 145.2 97 74.2
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.4e-33 145.2 78 85.9
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 3.1e-33 144.8 92 77.2
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 3.1e-33 144.8 82 82.9
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 3.1e-33 144.8 78 83.3
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 3.1e-33 144.8 82 81.7
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 3.1e-33 144.8 82 80.5
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 3.1e-33 144.8 82 81.7
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 4.0e-33 144.4 78 84.6
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 4.0e-33 144.4 85 77.6
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 4.0e-33 144.4 78 85.9
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 4.0e-33 144.4 82 80.5
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.0e-33 144.4 93 75.3
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 5.3e-33 144.1 87 79.3
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 5.3e-33 144.1 91 76.9
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 5.3e-33 144.1 82 81.7
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 5.3e-33 144.1 82 80.5
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 5.3e-33 144.1 82 81.7
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 6.9e-33 143.7 78 82.1
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 6.9e-33 143.7 94 78.7
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 6.9e-33 143.7 93 76.3
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 6.9e-33 143.7 82 80.5
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 6.9e-33 143.7 79 84.8
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 9.0e-33 143.3 78 84.6
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 9.0e-33 143.3 78 83.3
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 1.2e-32 142.9 79 84.8
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.5e-32 142.5 79 82.3
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.5e-32 142.5 79 84.8
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 1.5e-32 142.5 78 84.6
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 1.5e-32 142.5 93 73.1
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.0e-32 142.1 79 82.3
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 2.0e-32 142.1 78 84.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.0e-32 142.1 82 78.0
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.6e-32 141.7 82 79.3
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.6e-32 141.7 93 75.3
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 3.4e-32 141.4 82 80.5
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 3.4e-32 141.4 86 77.9
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 4.5e-32 141.0 82 80.5
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 4.5e-32 141.0 85 77.6
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 4.5e-32 141.0 82 78.0
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 5.8e-32 140.6 79 83.5
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 5.8e-32 140.6 82 76.8
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 5.8e-32 140.6 82 76.8
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 5.8e-32 140.6 86 74.4
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 5.8e-32 140.6 82 79.3
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 9.9e-32 139.8 78 83.3
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.3e-31 139.4 70 92.9
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.3e-31 139.4 82 78.0
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.3e-31 139.4 82 78.0
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.7e-31 139.0 78 82.1
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 2.2e-31 138.7 79 79.7
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.2e-31 138.7 78 82.1
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 2.2e-31 138.7 90 73.3
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.2e-31 138.7 78 80.8
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 3.8e-31 137.9 82 75.6
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 3.8e-31 137.9 82 75.6
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 3.8e-31 137.9 82 75.6
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 3.8e-31 137.9 82 75.6
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 3.8e-31 137.9 82 75.6
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 3.8e-31 137.9 93 73.1
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 4.9e-31 137.5 82 75.6
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 4.9e-31 137.5 82 75.6
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 4.9e-31 137.5 79 82.3
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 4.9e-31 137.5 79 79.7
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 4.9e-31 137.5 79 79.7
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 1.1e-30 136.3 79 78.5
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.9e-30 135.6 79 82.3
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.9e-30 135.6 79 82.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.9e-30 135.6 85 76.5
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 2.5e-30 135.2 82 74.4
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.2e-30 134.8 79 78.5
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 3.2e-30 134.8 82 74.4
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 3.2e-30 134.8 78 79.5
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 4.2e-30 134.4 82 74.4
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 5.5e-30 134.0 78 80.8
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 5.5e-30 134.0 87 72.4
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 2.7e-29 131.7 71 85.9
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 2.7e-29 131.7 78 78.2
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 3.5e-29 131.3 71 83.1
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.0e-28 129.8 71 83.1
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 1.0e-28 129.8 86 72.1
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.8e-28 129.0 106 61.3
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.3e-28 128.6 71 84.5
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 3.0e-28 128.3 70 85.7
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.0e-28 128.3 70 84.3
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 3.3e-27 124.8 70 82.9
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 5.6e-27 124.0 88 70.5
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 7.4e-27 123.6 70 81.4
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 7.4e-27 123.6 116 57.8
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 9.0e-25 116.7 71 76.1
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.7e-23 112.5 71 76.1
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 6.5e-23 110.5 68 72.1
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 7.1e-22 107.1 71 71.8
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 3.5e-21 104.8 70 74.3
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-19 99.8 93 57.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 2.5e-19 98.6 87 54.0
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 5.7e-19 97.4 87 52.9
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 1.3e-18 96.3 50 86.0
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 2.2e-18 95.5 71 64.8
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.4e-17 92.0 84 57.1
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-17 91.3 51 80.4
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-17 91.3 51 80.4
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-17 91.3 51 80.4
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-17 91.3 51 80.4
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.6e-16 88.6 58 72.4
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 2.9e-15 85.1 81 49.4
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.9e-15 85.1 80 60.0
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-15 85.1 47 78.7
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-15 85.1 49 79.6
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 8.5e-15 83.6 49 79.6
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 7.2e-14 80.5 48 77.1
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 3.9e-12 74.7 54 61.1
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 8.8e-12 73.6 54 64.8
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 5.9e-08 60.8 44 70.5


User provided reference genes

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