Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.3e-176 622.9 306 100.0
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.1e-88 330.9 383 50.9
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 3.2e-77 292.7 377 48.5
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.7e-70 270.4 390 45.1
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 4.6e-68 262.3 386 45.1
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 4.8e-65 252.3 378 41.5
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 5.8e-63 245.4 381 40.2
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.3e-62 244.2 379 40.1
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 4.2e-61 239.2 347 39.8
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 9.3e-61 238.0 314 43.3
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.6e-60 237.3 367 39.5
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 1.8e-59 233.8 304 45.1
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 2.3e-59 233.4 346 42.2
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 8.7e-59 231.5 381 39.4
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.9e-58 230.3 364 39.3
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 3.3e-58 229.6 385 39.5
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 3.3e-58 229.6 385 39.5
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 4.3e-58 229.2 313 43.1
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 7.4e-58 228.4 369 40.9
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 9.7e-58 228.0 365 39.5
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 9.7e-58 228.0 383 39.2
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.6e-57 227.3 364 39.0
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.7e-57 226.1 371 38.5
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 4.8e-57 225.7 334 41.9
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 4.8e-57 225.7 380 39.7
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 4.8e-57 225.7 365 40.3
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 8.2e-57 224.9 375 39.2
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 8.2e-57 224.9 352 40.6
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 1.1e-56 224.6 343 39.7
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.8e-56 223.8 376 39.1
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.4e-56 223.4 355 37.5
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 9.0e-56 221.5 287 43.9
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.2e-55 221.1 351 39.9
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.2e-55 221.1 341 39.6
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 1.5e-55 220.7 378 38.6
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 3.4e-55 219.5 338 40.2
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 7.7e-55 218.4 347 39.5
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.0e-54 218.0 374 38.0
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.0e-54 218.0 364 39.3
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 1.7e-54 217.2 364 37.1
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 5.0e-54 215.7 221 50.7
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 5.0e-54 215.7 363 39.4
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 5.0e-54 215.7 364 39.0
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 5.0e-54 215.7 385 36.6
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 1.1e-53 214.5 371 35.8
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 5.5e-53 212.2 293 41.6
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 5.5e-53 212.2 293 41.6
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 5.5e-53 212.2 335 40.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.2e-52 211.1 368 39.1
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 1.6e-52 210.7 339 36.6
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 1.6e-52 210.7 313 40.3
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 2.7e-52 209.9 295 39.7
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 2.7e-52 209.9 351 38.2
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 2.7e-52 209.9 335 40.3
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 2.7e-52 209.9 335 40.3
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 2.7e-52 209.9 300 41.0
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 3.6e-52 209.5 294 39.5
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.1e-52 208.8 328 40.5
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.0e-51 208.0 338 35.2
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.4e-51 207.6 339 39.2
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 6.7e-51 205.3 310 38.1
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 6.7e-51 205.3 306 38.9
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 6.7e-51 205.3 310 38.1
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 6.7e-51 205.3 305 41.6
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 8.8e-51 204.9 342 36.0
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.1e-50 204.5 349 37.2
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 1.5e-50 204.1 348 39.7
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 3.3e-50 203.0 295 40.7
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 4.3e-50 202.6 310 38.1
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 5.7e-50 202.2 378 36.0
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 7.4e-50 201.8 321 37.7
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.3e-49 201.1 317 37.9
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 8.2e-49 198.4 377 36.9
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 3.1e-48 196.4 289 41.2
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 4.1e-48 196.1 369 36.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 4.5e-47 192.6 256 41.4
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 1.0e-46 191.4 285 39.3
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 1.0e-46 191.4 320 39.1
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 1.3e-46 191.0 302 39.1
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.3e-46 191.0 302 40.1
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.7e-46 190.7 304 40.1
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 3.8e-46 189.5 313 38.0
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 3.8e-46 189.5 316 38.9
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 3.8e-46 189.5 316 38.9
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 3.8e-46 189.5 306 39.2
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.9e-45 187.2 306 38.6
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.7e-44 183.3 283 37.1
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 4.7e-44 182.6 172 52.9
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 1.0e-43 181.4 118 69.5
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 1.8e-43 180.6 312 33.0
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 3.9e-43 179.5 203 48.3
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 8.8e-43 178.3 311 35.7
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.1e-42 177.9 282 36.9
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 4.4e-42 176.0 288 37.5
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 7.4e-42 175.3 262 38.5
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.7e-38 164.1 122 59.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.7e-38 164.1 327 33.9
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.7e-36 156.8 111 64.0
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 6.1e-36 155.6 160 46.9
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 8.2e-33 145.2 113 56.6
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 4.1e-32 142.9 230 35.7
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 7.0e-32 142.1 291 37.1
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.6e-31 140.2 107 55.1
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.0e-30 138.3 165 41.8
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 5.0e-30 136.0 289 32.5
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 2.0e-23 114.0 198 39.9
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 2.9e-22 110.2 206 36.4
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 2.7e-20 103.6 305 27.9
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 3.6e-20 103.2 116 44.0
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 1.0e-19 101.7 180 40.6
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.4e-19 101.3 118 44.1
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 2.0e-18 97.4 70 58.6
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.2e-17 94.0 67 56.7
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 6.3e-17 92.4 62 64.5
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 9.1e-16 88.6 261 29.5
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 9.1e-16 88.6 236 30.5
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 2.7e-15 87.0 263 29.3
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 3.5e-15 86.7 71 52.1
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 4.5e-15 86.3 238 30.7
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 4.5e-15 86.3 53 62.3
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 4.5e-15 86.3 118 44.9
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.1e-13 81.6 70 51.4
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 1.5e-13 81.3 143 42.0
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 8.0e-12 75.5 154 35.7
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 1.4e-11 74.7 64 45.3
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 2.6e-10 70.5 99 42.4
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 1.0e-06 58.5 79 41.8
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 1.7e-06 57.8 55 50.9


User provided reference genes

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