Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 0.0e+00 1344.7 717 100.0
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 3.0e-49 201.1 956 28.7
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 6.0e-42 176.8 818 28.5
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 8.4e-36 156.4 939 26.5
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 1.8e-17 95.5 585 24.8
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 1.3e-12 79.3 59 59.3
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 1.7e-12 79.0 59 59.3
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 2.9e-12 78.2 51 66.7
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.1e-11 76.3 62 54.8
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 1.4e-11 75.9 681 24.4
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.9e-11 75.5 760 23.0
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 1.9e-11 75.5 358 25.1
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 3.2e-11 74.7 86 45.3
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 4.2e-11 74.3 69 56.5
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 2.1e-10 72.0 82 43.9
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 3.5e-10 71.2 183 33.3
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 7.9e-10 70.1 54 55.6
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 1.0e-09 69.7 72 48.6
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 3.0e-09 68.2 64 51.6
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 3.0e-09 68.2 58 51.7
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 3.9e-09 67.8 58 53.4
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 8.7e-09 66.6 69 47.8
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.1e-08 66.2 320 23.4
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.9e-08 65.5 665 21.4
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.9e-08 65.5 50 62.0
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.9e-08 65.5 87 39.1
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 1.9e-08 65.5 616 20.6
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 2.5e-08 65.1 88 38.6
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.5e-08 65.1 51 58.8
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.5e-08 65.1 51 58.8
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.3e-08 64.7 51 54.9
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 9.6e-08 63.2 53 56.6
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 1.3e-07 62.8 204 29.4
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.3e-07 62.8 90 36.7
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 2.1e-07 62.0 62 50.0
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 2.1e-07 62.0 82 34.1
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 2.8e-07 61.6 58 53.4
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 3.7e-07 61.2 53 52.8
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.7e-07 61.2 55 50.9
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 3.7e-07 61.2 58 51.7
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 3.7e-07 61.2 54 48.1
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 6.3e-07 60.5 46 58.7
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 6.3e-07 60.5 54 53.7
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 8.2e-07 60.1 194 30.4
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 8.2e-07 60.1 226 29.2
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.1e-06 59.7 309 25.6
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.4e-06 59.3 73 41.1
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 1.4e-06 59.3 202 31.7
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 1.4e-06 59.3 49 59.2
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 1.8e-06 58.9 40 62.5
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 3.1e-06 58.2 46 56.5
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 3.1e-06 58.2 208 30.8
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 3.1e-06 58.2 687 23.4
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 5.3e-06 57.4 61 47.5
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.3e-06 57.4 194 29.4
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 5.3e-06 57.4 63 44.4
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 5.3e-06 57.4 63 41.3
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 6.9e-06 57.0 46 54.3
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 6.9e-06 57.0 53 52.8


User provided reference genes

Program Settings