Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.5e-300 1035.4 519 100.0
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 4.8e-267 924.1 613 76.7
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 6.3e-267 923.7 613 76.5
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 1.4e-266 922.5 552 83.7
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 2.6e-265 918.3 550 82.9
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 7.7e-265 916.8 550 84.5
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 1.0e-264 916.4 550 84.7
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 2.7e-262 908.3 550 82.2
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.3e-260 901.4 531 82.5
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 2.8e-259 898.3 543 80.7
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 4.1e-258 894.4 552 83.3
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 1.7e-256 889.0 549 80.9
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 5.5e-255 884.0 543 80.5
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 1.2e-254 882.9 543 79.4
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 1.2e-254 882.9 543 79.4
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.6e-254 882.5 545 79.1
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 1.6e-254 882.5 544 82.4
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 2.1e-254 882.1 533 81.6
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 2.1e-254 882.1 543 81.6
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.3e-253 878.6 543 82.0
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 2.3e-253 878.6 566 80.2
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 4.8e-251 870.9 543 78.5
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 2.4e-250 868.6 552 79.7
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.1e-250 868.2 543 78.8
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 2.6e-249 865.1 543 80.1
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 5.9e-249 864.0 543 79.6
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 5.9e-249 864.0 543 79.6
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 1.7e-248 862.4 542 80.8
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 2.2e-248 862.1 534 81.1
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 3.8e-248 861.3 542 79.3
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 5.0e-248 860.9 550 76.0
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 5.0e-248 860.9 534 81.1
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 1.1e-247 859.8 543 79.0
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 2.5e-247 858.6 542 78.6
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 5.5e-247 857.4 543 80.1
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 9.4e-247 856.7 551 75.7
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 1.2e-246 856.3 542 76.8
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 1.2e-246 856.3 542 76.8
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 2.1e-246 855.5 535 81.7
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 6.1e-246 854.0 542 78.0
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 1.0e-245 853.2 542 76.6
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.0e-245 853.2 542 80.3
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 2.3e-245 852.0 542 79.2
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 5.2e-245 850.9 543 80.7
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 8.8e-245 850.1 541 80.0
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 1.1e-244 849.7 538 81.0
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.0e-244 849.0 542 76.4
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 5.7e-244 847.4 541 76.5
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 7.4e-244 847.0 551 77.0
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 7.4e-244 847.0 541 78.4
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.3e-243 846.3 576 75.9
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.4e-242 842.8 535 80.4
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 2.4e-242 842.0 541 77.8
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 1.2e-241 839.7 543 79.2
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 1.6e-241 839.3 541 79.3
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 2.0e-241 839.0 542 77.5
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.0e-241 839.0 535 77.0
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 3.5e-241 838.2 543 78.5
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.3e-240 836.3 539 79.2
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 1.3e-240 836.3 542 77.7
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 2.2e-240 835.5 543 75.0
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 3.8e-240 834.7 538 79.4
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 6.5e-240 833.9 581 73.7
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.8e-237 825.9 520 80.2
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 1.2e-236 823.2 540 75.9
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 2.6e-236 822.0 539 76.8
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 4.8e-235 817.8 540 78.0
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.4e-234 816.2 538 76.2
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.4e-234 815.5 539 76.3
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 7.0e-234 813.9 556 73.9
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.5e-233 811.6 539 76.4
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.9e-232 808.5 539 76.3
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 1.9e-231 805.8 544 73.9
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.0e-229 800.0 539 77.6
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 2.0e-228 795.8 532 74.8
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 2.0e-228 795.8 539 74.2
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 5.7e-228 794.3 501 80.2
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.4e-226 789.6 642 64.6
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 3.1e-226 788.5 543 75.7
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.6e-225 786.2 543 74.0
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 4.5e-225 784.6 599 69.3
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 8.6e-216 753.8 534 68.2
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.9e-215 752.7 544 70.6
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 7.3e-215 750.7 534 69.9
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 9.5e-215 750.4 544 73.3
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 2.0e-212 742.7 550 72.5
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 2.2e-211 739.2 730 56.6
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.4e-210 735.7 555 69.5
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 5.6e-207 724.5 533 69.2
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 5.4e-202 708.0 453 79.5
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 3.3e-199 698.7 549 66.5
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 2.4e-189 666.0 506 68.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 5.2e-189 664.8 549 66.1
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.0e-180 636.3 400 77.5
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.0e-180 636.3 536 63.6
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.5e-175 620.2 440 69.3
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 1.9e-175 619.8 376 80.9
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 3.3e-175 619.0 377 80.4
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 4.9e-171 605.1 539 55.1
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 8.4e-171 604.4 545 55.0
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 2.3e-160 569.7 356 79.5
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 6.7e-160 568.2 526 53.0
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 3.7e-158 562.4 369 74.0
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 2.9e-139 499.6 497 51.3
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 2.7e-137 493.0 370 64.6
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 2.5e-130 469.9 342 64.9
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.1e-127 461.1 490 51.6
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 5.9e-124 448.7 275 78.5
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 4.0e-112 409.5 354 63.6
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 6.3e-110 402.1 269 74.3
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.4e-109 401.0 632 37.0
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 3.4e-103 379.8 316 65.2
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.7e-86 324.3 220 71.4
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 3.9e-83 313.2 272 59.9
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 4.7e-73 279.6 401 39.4
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.1e-69 265.8 246 58.5
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 9.3e-69 265.4 164 79.3
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 3.3e-66 256.9 154 83.8
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 1.3e-65 255.0 183 71.6
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.6e-65 254.6 152 79.6
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.8e-64 251.1 600 29.3
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 5.4e-61 239.6 536 29.3
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.7e-60 237.3 139 84.2
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 5.1e-59 233.0 170 70.0
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.5e-55 221.5 158 69.0
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.1e-53 215.3 250 51.2
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.4e-53 214.2 152 73.0
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 2.1e-52 211.1 141 73.0
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.0e-52 209.5 152 71.7
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 8.7e-51 205.7 163 60.1
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 2.1e-49 201.1 819 22.7
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.8e-49 200.7 244 42.6
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.2e-47 195.3 109 86.2
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.9e-46 190.7 126 78.6
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 8.4e-46 189.1 136 66.9
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.2e-44 185.3 193 52.8
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 2.8e-33 147.5 85 87.1
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.3e-17 95.5 121 44.6
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 5.5e-13 80.1 63 60.3
SGA_v2.0_scaffold16G07518 Striga asiatica HOM05D005139 ORTHO05D006125 9.4e-13 79.3 125 38.4
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.5e-10 72.0 74 51.4
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.7e-09 67.4 53 64.2
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 4.8e-09 67.0 75 46.7
Rhsim08G0243300 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.2e-07 62.4 37 64.9
PGSC0003DMG400002563 Solanum tuberosum HOM05D003301 ORTHO05D003665 1.0e-06 59.3 260 21.5
Rhsim02G0051500 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.2e-06 58.2 47 59.6


User provided reference genes

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