Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.4e-165 586.3 306 100.0
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 1.1e-74 284.3 331 57.4
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 7.1e-61 238.4 337 51.3
SGA_v2.0_scaffold130G34346 Striga asiatica HOM05D010484 ORTHO05D001329 2.2e-54 216.9 335 46.6
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 3.1e-48 196.4 315 45.1
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 1.0e-46 191.4 326 45.4
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 7.0e-40 168.7 332 40.4
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 9.1e-40 168.3 324 42.6
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 2.1e-36 157.1 303 40.9
MSTRG.15244 Avicennia marina HOM05D010484 ORTHO05D010242 1.7e-33 147.5 308 41.2
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 5.3e-32 142.5 343 37.0
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 2.2e-30 137.1 345 37.1
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 5.0e-30 136.0 334 36.8
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 6.5e-30 135.6 350 36.6
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 6.5e-30 135.6 337 35.9
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 3.2e-29 133.3 348 37.6
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 5.5e-29 132.5 345 35.1
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 1.6e-28 131.0 347 35.4
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 1.6e-28 131.0 329 36.5
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 2.7e-28 130.2 347 33.7
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 3.6e-28 129.8 352 36.1
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 1.0e-27 128.3 309 36.6
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 1.0e-27 128.3 321 34.6
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.8e-27 127.5 316 37.0
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 8.8e-27 125.2 341 36.4
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.2e-26 124.8 328 36.0
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 2.8e-25 120.2 331 35.3
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.7e-25 119.8 331 35.6
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 3.7e-25 119.8 342 37.1
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 8.3e-25 118.6 348 33.6
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 1.1e-24 118.2 334 34.1
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.4e-24 117.9 323 34.1
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 1.8e-24 117.5 257 38.1
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.2e-23 114.8 329 34.3
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 1.6e-23 114.4 319 34.8
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 1.6e-23 114.4 358 33.8
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 3.5e-23 113.2 349 34.1
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 1.7e-22 110.9 345 34.8
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.2e-22 110.5 320 35.6
SalBow8G4768 Salvia bowleyana HOM05D010484 ORTHO05D010242 8.5e-22 108.6 322 35.7
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 2.5e-21 107.1 332 33.1
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 3.2e-21 106.7 350 35.1
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 3.2e-21 106.7 347 31.7
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 4.2e-21 106.3 339 32.2
Oeu025352.2 Olea europaea HOM05D001501 ORTHO05D001329 5.5e-21 105.9 360 30.8
PGSC0003DMG400012438 Solanum tuberosum HOM05D010484 ORTHO05D010242 9.4e-21 105.1 413 30.5
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 2.1e-20 104.0 300 34.7
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 3.6e-20 103.2 329 32.5
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 3.6e-20 103.2 346 32.7
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 1.0e-19 101.7 187 40.1
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 3.0e-19 100.1 319 33.2
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 6.8e-19 99.0 313 33.9
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 6.8e-19 99.0 317 34.7
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 8.8e-19 98.6 328 32.6
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 2.6e-18 97.1 331 31.7
Solyc07g062740.4 Solanum lycopersicum HOM05D010484 ORTHO05D010242 2.6e-18 97.1 415 29.2
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 7.5e-18 95.5 244 33.2
Sopen07g030970 Solanum pennellii HOM05D010484 ORTHO05D010242 7.5e-18 95.5 414 29.0
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 9.8e-18 95.1 347 31.7
EL10Ac4g08261 Beta vulgaris HOM05D001501 ORTHO05D001329 3.7e-17 93.2 348 32.5
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 8.3e-17 92.0 336 33.0
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 1.8e-16 90.9 244 34.0
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 2.4e-16 90.5 343 31.5
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 4.1e-16 89.7 348 30.5
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 9.1e-16 88.6 336 33.0
AUR62019490 Chenopodium quinoa HOM05D001501 ORTHO05D001329 9.1e-16 88.6 152 40.8
AUR62036146 Chenopodium quinoa HOM05D001501 ORTHO05D001329 2.0e-15 87.4 154 40.9
PSO675G3629 Papaver somniferum HOM05D001501 ORTHO05D001329 2.7e-15 87.0 238 35.7
SGA_v2.0_scaffold34G13793 Striga asiatica HOM05D010484 ORTHO05D010242 4.5e-15 86.3 247 34.0
PSO541G6205 Papaver somniferum HOM05D001501 ORTHO05D001329 1.0e-14 85.1 226 35.0
Sed0026243 Sechium edule HOM05D001501 ORTHO05D001329 1.0e-14 85.1 106 49.1
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 2.3e-14 84.0 387 30.0
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 3.8e-14 83.2 303 31.7
Aqoxy1G02259 Aquilegia oxysepala HOM05D001501 ORTHO05D001329 6.6e-14 82.4 386 28.5
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 6.6e-14 82.4 341 32.0
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 8.6e-14 82.0 345 33.0
DCAR_017119 Daucus carota HOM05D010484 ORTHO05D010242 1.1e-13 81.6 299 32.1
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 1.5e-13 81.3 322 32.0
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 3.3e-13 80.1 301 34.2
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 4.2e-13 79.7 329 31.9
Actinidia18779 Actinidia chinensis HOM05D010484 ORTHO05D001329 7.2e-13 79.0 316 30.4
MBI07_g01326_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 7.2e-13 79.0 111 44.1
MBI07_g38899_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 7.2e-13 79.0 111 44.1
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.6e-12 77.8 343 28.3
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 2.1e-12 77.4 182 36.3
MBI06_g00806_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 2.8e-12 77.0 311 28.3
Sc16g0007300 Simmondsia chinensis HOM05D001501 ORTHO05D001329 4.7e-12 76.3 310 31.3
SGA_v2.0_scaffold239G44034 Striga asiatica HOM05D001501 ORTHO05D001329 8.0e-12 75.5 112 45.5
ECA234G3280 Erigeron canadensis HOM05D016023 ORTHO05D010242 1.8e-11 74.3 358 29.3
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 4.0e-11 73.2 345 29.3
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 5.2e-11 72.8 349 30.1
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 5.2e-11 72.8 349 30.1
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 6.8e-11 72.4 335 31.0
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 6.8e-11 72.4 342 29.2
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 6.8e-11 72.4 349 27.5
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 1.2e-10 71.6 350 29.7
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 2.0e-10 70.9 346 28.6
MD05G1296400 Malus domestica HOM05D001501 ORTHO05D001329 3.4e-10 70.1 139 37.4
unitig_37.g12566 Utricularia gibba HOM05D001501 ORTHO05D001329 3.4e-10 70.1 168 34.5
unitig_747.g21580 Utricularia gibba HOM05D010484 ORTHO05D010242 3.4e-10 70.1 305 32.5
Glyma.13G226900 Glycine max HOM05D001501 ORTHO05D001329 1.3e-09 68.2 121 38.8
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 2.9e-09 67.0 209 32.1
Sed0013458 Sechium edule HOM05D001501 ORTHO05D001329 2.9e-09 67.0 223 32.7
CiPaw.10G061300 Carya illinoinensis HOM05D001501 ORTHO05D001329 6.3e-09 65.9 139 37.4
Nn3g21114 Nelumbo nucifera HOM05D001501 ORTHO05D001329 6.3e-09 65.9 118 35.6
Dinv12367 Davidia involucrata HOM05D001501 ORTHO05D001329 8.3e-09 65.5 114 39.5
MD10G1276400 Malus domestica HOM05D001501 ORTHO05D001329 8.3e-09 65.5 107 39.3
Nn1g04509 Nelumbo nucifera HOM05D001501 ORTHO05D001329 8.3e-09 65.5 129 37.2
CDE10G0503 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 1.1e-08 65.1 121 41.3
HanXRQChr10g0317081 Helianthus annuus HOM05D016023 ORTHO05D010242 1.8e-08 64.3 183 33.9
Glyma.15G085500 Glycine max HOM05D001501 ORTHO05D001329 2.4e-08 63.9 121 38.0
HanXRQChr10g0317071 Helianthus annuus HOM05D016023 ORTHO05D010242 2.4e-08 63.9 170 34.1
Sopen02g021180 Solanum pennellii HOM05D001501 ORTHO05D001329 3.2e-08 63.5 158 36.1
TAR627G0009 Trochodendron aralioides HOM05D001501 ORTHO05D001329 3.2e-08 63.5 120 37.5
Nitab4.5_0000437g0150 Nicotiana tabacum HOM05D001501 ORTHO05D001329 4.1e-08 63.2 118 37.3
Psat7g069240 Pisum sativum HOM05D001501 ORTHO05D001329 4.1e-08 63.2 119 38.7
TAR627G0776 Trochodendron aralioides HOM05D001501 ORTHO05D001329 5.4e-08 62.8 117 37.6
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 7.0e-08 62.4 352 28.4
CiPaw.09G072400 Carya illinoinensis HOM05D001501 ORTHO05D001329 7.0e-08 62.4 118 35.6
Atru.chr6.2761 Acer truncatum HOM05D001501 ORTHO05D001329 9.2e-08 62.0 179 31.8
Duzib192G0322 Durio zibethinus HOM05D001501 ORTHO05D001329 9.2e-08 62.0 130 36.9
Medtr2g016760 Medicago truncatula HOM05D001501 ORTHO05D001329 9.2e-08 62.0 120 39.2
SGA_v2.0_scaffold21G09335 Striga asiatica HOM05D001501 ORTHO05D001329 9.2e-08 62.0 105 41.9
TWI09G0923 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 9.2e-08 62.0 209 28.7
Nitab4.5_0009428g0010 Nicotiana tabacum HOM05D001501 ORTHO05D001329 1.2e-07 61.6 118 36.4
VMungo0540G0954 Vigna mungo HOM05D001501 ORTHO05D001329 1.2e-07 61.6 121 38.0
ECA240G0649 Erigeron canadensis HOM05D016023 ORTHO05D010242 2.0e-07 60.8 205 30.7
HanXRQChr13g0391171 Helianthus annuus HOM05D016023 ORTHO05D010242 2.0e-07 60.8 215 30.7
Lalb_Chr18g0054731 Lupinus albus HOM05D001501 ORTHO05D001329 2.7e-07 60.5 121 37.2
Peaxi162Scf00384g00013 Petunia axillaris HOM05D001501 ORTHO05D001329 2.7e-07 60.5 125 34.4
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 3.5e-07 60.1 216 31.9
TAR626G1129 Trochodendron aralioides HOM05D001501 ORTHO05D001329 3.5e-07 60.1 118 37.3
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 4.6e-07 59.7 336 28.3
Ca_17901_v3 Cicer arietinum L. HOM05D001501 ORTHO05D001329 5.9e-07 59.3 109 37.6
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 7.8e-07 58.9 348 25.6
Lj6g0010216 Lotus japonicus HOM05D001501 ORTHO05D001329 7.8e-07 58.9 136 35.3
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 1.0e-06 58.5 355 27.0
Thecc.02G212700 Theobroma cacao HOM05D001501 ORTHO05D001329 1.0e-06 58.5 126 35.7
TWI59G0319 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 1.3e-06 58.2 112 38.4
Manes.17G058500 Manihot esculenta HOM05D001501 ORTHO05D001329 1.7e-06 57.8 290 26.9
QL08p042327 Quercus lobata HOM05D001501 ORTHO05D001329 1.7e-06 57.8 116 41.4
Sed0016466 Sechium edule HOM05D001501 ORTHO05D001329 1.7e-06 57.8 137 34.3
TWI23G0154 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 1.7e-06 57.8 112 38.4
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 2.3e-06 57.4 345 28.1
Eucgr.K01150 Eucalyptus grandis HOM05D001501 ORTHO05D001329 2.3e-06 57.4 169 33.1
PSO782G4099 Papaver somniferum HOM05D001501 ORTHO05D001329 2.9e-06 57.0 116 37.1
Ca_03840_v3 Cicer arietinum L. HOM05D001501 ORTHO05D001329 5.0e-06 56.2 108 36.1
ClCG07G002630 Citrullus lanatus HOM05D001501 ORTHO05D001329 5.0e-06 56.2 136 36.0
Psat1g195160 Pisum sativum HOM05D001501 ORTHO05D001329 5.0e-06 56.2 121 33.1
QL05p048958 Quercus lobata HOM05D001501 ORTHO05D001329 5.0e-06 56.2 241 28.6
Cpa.g.sc52.155 Carica papaya HOM05D001501 ORTHO05D001329 6.6e-06 55.8 114 37.7
Dinv12368 Davidia involucrata HOM05D001501 ORTHO05D001329 6.6e-06 55.8 115 37.4
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 8.6e-06 55.5 225 30.7


User provided reference genes

Program Settings