Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 4.8e-180 634.4 329 100.0
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 1.8e-139 499.6 331 78.2
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 2.3e-129 466.1 343 72.9
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 4.1e-123 445.3 330 70.0
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 6.0e-122 441.4 322 70.8
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 7.8e-122 441.0 322 70.8
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 1.3e-121 440.3 329 69.0
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 8.1e-119 431.0 324 67.6
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 2.4e-118 429.5 323 67.5
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 8.9e-118 427.6 329 65.3
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 2.0e-117 426.4 324 67.3
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 4.4e-117 425.2 324 67.0
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 9.9e-117 424.1 325 65.8
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.2e-116 422.9 329 64.7
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 2.9e-116 422.5 282 75.5
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 1.9e-115 419.9 326 67.8
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 3.2e-115 419.1 296 72.3
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 4.1e-115 418.7 325 64.6
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 5.4e-115 418.3 308 70.1
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 7.1e-115 417.9 329 66.3
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 1.2e-114 417.2 325 65.5
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 6.0e-114 414.8 324 65.7
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 6.0e-114 414.8 323 65.9
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 1.0e-113 414.1 335 64.8
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 1.0e-113 414.1 317 67.5
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 3.0e-113 412.5 324 64.5
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 5.1e-113 411.8 324 64.5
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 8.7e-113 411.0 325 65.2
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 8.7e-113 411.0 309 69.6
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 1.9e-112 409.8 313 67.1
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 5.6e-112 408.3 324 64.2
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 9.6e-112 407.5 308 67.9
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 4.7e-111 405.2 284 70.4
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 4.7e-111 405.2 324 63.6
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 4.7e-111 405.2 325 65.2
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 6.2e-111 404.8 321 64.2
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 6.2e-111 404.8 324 65.1
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 1.1e-110 404.1 322 65.2
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 1.8e-110 403.3 324 64.5
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 1.8e-110 403.3 329 65.3
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 2.4e-110 402.9 293 70.3
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 1.5e-109 400.2 313 64.9
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 2.0e-109 399.8 322 63.7
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 2.0e-109 399.8 328 62.2
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 2.0e-109 399.8 284 70.1
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 2.6e-109 399.4 322 63.7
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 2.6e-109 399.4 332 63.6
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 3.4e-109 399.1 283 69.6
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 4.4e-109 398.7 255 76.9
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 4.4e-109 398.7 324 65.4
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 4.4e-109 398.7 327 63.3
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 5.8e-109 398.3 322 63.7
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 9.9e-109 397.5 312 63.8
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 9.9e-109 397.5 324 63.6
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 1.7e-108 396.7 255 76.5
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 1.7e-108 396.7 303 66.0
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 2.9e-108 396.0 320 63.4
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 3.8e-108 395.6 312 63.8
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 6.4e-108 394.8 322 64.9
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 8.4e-108 394.4 332 62.7
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 8.4e-108 394.4 326 62.0
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 8.4e-108 394.4 305 65.9
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 3.2e-107 392.5 326 61.3
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 7.1e-107 391.3 328 61.6
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 1.6e-106 390.2 331 61.9
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 6.0e-106 388.3 329 60.8
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 3.9e-105 385.6 328 61.3
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 3.9e-105 385.6 266 69.5
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 1.9e-104 383.3 325 61.8
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 4.3e-104 382.1 324 62.0
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 7.3e-104 381.3 282 67.7
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 2.1e-103 379.8 312 61.9
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 1.1e-102 377.5 308 65.3
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 1.8e-102 376.7 282 67.4
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 3.1e-102 375.9 396 54.5
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 7.6e-101 371.3 322 59.3
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 9.9e-101 370.9 346 57.8
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 2.9e-100 369.4 340 57.1
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 2.9e-100 369.4 337 60.8
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 8.4e-100 367.9 336 58.3
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 1.4e-99 367.1 295 62.0
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 4.2e-99 365.5 267 66.7
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 1.2e-98 364.0 304 61.5
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 1.6e-98 363.6 238 75.6
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 3.5e-98 362.5 270 65.6
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 6.0e-98 361.7 305 61.0
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.5e-96 357.1 238 74.8
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 9.6e-96 354.4 237 71.3
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 8.1e-95 351.3 235 72.8
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 1.3e-92 344.0 280 62.1
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 1.9e-91 340.1 251 64.5
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 1.2e-90 337.4 270 65.2
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 5.1e-89 332.0 328 54.3
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 6.7e-89 331.6 213 74.6
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 1.3e-87 327.4 278 62.6
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 3.4e-85 319.3 213 70.9
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 5.8e-85 318.5 257 63.4
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 9.3e-83 311.2 246 63.0
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 5.3e-78 295.4 319 51.7
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 3.3e-72 276.2 283 49.5
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 3.7e-71 272.7 241 56.4
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 1.4e-65 254.2 251 55.0
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 8.8e-65 251.5 221 58.4
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 1.5e-64 250.8 257 49.4
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 2.8e-63 246.5 251 51.4
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 8.2e-55 218.4 149 71.1
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 4.2e-51 206.1 284 40.8
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 5.3e-46 189.1 130 70.0
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 9.1e-38 161.8 104 73.1
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 7.0e-30 135.6 88 75.0
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.0e-29 134.0 88 75.0
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 3.6e-26 123.2 81 74.1
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 1.7e-20 104.4 76 67.1
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 5.0e-20 102.8 260 31.2
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.0e-16 90.9 66 65.2
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 9.8e-16 88.6 65 66.2
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 2.6e-08 63.9 36 77.8
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 1.9e-06 57.8 35 71.4


User provided reference genes

Program Settings