Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 8.5e-34 146.4 70 100.0
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 9.1e-20 99.8 65 73.8
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 9.1e-20 99.8 65 75.4
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.5e-19 99.0 77 66.2
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.5e-19 99.0 65 73.8
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.5e-19 99.0 65 73.8
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.5e-19 99.0 65 73.8
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.5e-19 99.0 64 71.9
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.4e-19 97.8 69 69.6
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.5e-19 97.4 54 83.3
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.5e-19 97.4 66 74.2
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 4.5e-19 97.4 65 72.3
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.7e-19 96.7 63 73.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.7e-19 96.7 63 73.0
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 7.7e-19 96.7 63 73.0
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 7.7e-19 96.7 76 64.5
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 7.7e-19 96.7 55 83.6
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 7.7e-19 96.7 55 83.6
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.7e-19 96.7 55 83.6
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 7.7e-19 96.7 51 86.3
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.0e-18 96.3 54 79.6
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.0e-18 96.3 66 74.2
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.0e-18 96.3 65 70.8
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.3e-18 95.9 55 81.8
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.3e-18 95.9 77 64.9
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.3e-18 95.9 59 76.3
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.7e-18 95.5 80 62.5
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.7e-18 95.5 52 78.8
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.2e-18 95.1 52 86.5
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 2.9e-18 94.7 59 76.3
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.9e-18 94.7 70 62.9
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 2.9e-18 94.7 55 78.2
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 2.9e-18 94.7 63 69.8
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 3.8e-18 94.4 76 63.2
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.0e-18 94.0 55 80.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 5.0e-18 94.0 53 83.0
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 5.0e-18 94.0 65 73.8
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 5.0e-18 94.0 53 79.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 6.5e-18 93.6 53 81.1
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.5e-18 93.6 68 63.2
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 6.5e-18 93.6 65 73.8
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 6.5e-18 93.6 65 70.8
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 6.5e-18 93.6 81 59.3
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 6.5e-18 93.6 63 69.8
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 8.5e-18 93.2 55 76.4
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 8.5e-18 93.2 49 81.6
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 8.5e-18 93.2 65 70.8
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 8.5e-18 93.2 67 70.1
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 8.5e-18 93.2 51 84.3
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 1.1e-17 92.8 67 64.2
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.1e-17 92.8 81 60.5
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.1e-17 92.8 65 70.8
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.1e-17 92.8 81 55.6
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.1e-17 92.8 67 62.7
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.1e-17 92.8 65 69.2
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.1e-17 92.8 53 73.6
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.1e-17 92.8 64 73.4
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 1.4e-17 92.4 56 75.0
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 1.4e-17 92.4 70 65.7
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.4e-17 92.4 69 63.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.4e-17 92.4 64 70.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.4e-17 92.4 56 76.8
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.4e-17 92.4 50 84.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.9e-17 92.0 55 74.5
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 1.9e-17 92.0 65 67.7
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.9e-17 92.0 63 68.3
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.9e-17 92.0 63 68.3
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.9e-17 92.0 65 69.2
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.9e-17 92.0 50 84.0
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.9e-17 92.0 76 61.8
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.5e-17 91.7 56 75.0
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.5e-17 91.7 60 66.7
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.5e-17 91.7 51 82.4
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 2.5e-17 91.7 51 82.4
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 2.5e-17 91.7 51 82.4
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.5e-17 91.7 60 73.3
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.5e-17 91.7 81 54.3
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 2.5e-17 91.7 67 61.2
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 2.5e-17 91.7 69 68.1
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.5e-17 91.7 51 82.4
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 3.2e-17 91.3 49 87.8
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 3.2e-17 91.3 65 67.7
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.2e-17 91.3 50 80.0
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 3.2e-17 91.3 66 68.2
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 4.2e-17 90.9 50 80.0
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 4.2e-17 90.9 65 64.6
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.2e-17 90.9 63 66.7
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.2e-17 90.9 50 80.0
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 5.5e-17 90.5 67 62.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.5e-17 90.5 50 80.0
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 5.5e-17 90.5 60 70.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 5.5e-17 90.5 65 70.8
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 5.5e-17 90.5 50 80.0
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 5.5e-17 90.5 65 66.2
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 7.2e-17 90.1 56 73.2
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 7.2e-17 90.1 56 73.2
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 7.2e-17 90.1 63 66.7
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 7.2e-17 90.1 63 66.7
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 7.2e-17 90.1 50 82.0
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 7.2e-17 90.1 65 67.7
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 7.2e-17 90.1 81 54.3
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 9.4e-17 89.7 63 61.9
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 9.4e-17 89.7 63 66.7
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 9.4e-17 89.7 53 77.4
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.2e-16 89.4 56 73.2
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.2e-16 89.4 51 80.4
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 2.1e-16 88.6 54 74.1
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 2.7e-16 88.2 50 76.0
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 2.7e-16 88.2 50 76.0
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 2.7e-16 88.2 50 76.0
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 6.1e-16 87.0 53 71.7
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 6.1e-16 87.0 49 79.6
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 6.1e-16 87.0 65 69.2
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 8.0e-16 86.7 73 60.3
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 8.0e-16 86.7 73 60.3
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.0e-16 86.7 63 65.1
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 8.0e-16 86.7 65 64.6
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 8.0e-16 86.7 50 78.0
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.0e-15 86.3 59 71.2
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.0e-15 86.3 65 63.1
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.0e-15 86.3 65 64.6
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 1.4e-15 85.9 66 65.2
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.4e-15 85.9 68 63.2
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.3e-15 85.1 53 71.7
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.3e-15 85.1 53 71.7
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 3.0e-15 84.7 66 62.1
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.0e-15 84.7 50 76.0
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 3.0e-15 84.7 57 71.9
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 3.0e-15 84.7 57 71.9
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.0e-15 84.7 65 67.7
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 3.9e-15 84.3 53 71.7
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 3.9e-15 84.3 46 82.6
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 3.9e-15 84.3 58 67.2
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 3.9e-15 84.3 46 80.4
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 5.2e-15 84.0 66 63.6
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 8.8e-15 83.2 58 69.0
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.1e-14 82.8 47 72.3
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.1e-14 82.8 47 72.3
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.0e-14 82.0 52 76.9
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.0e-14 82.0 65 69.2
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.7e-13 79.0 72 56.9
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.7e-13 79.0 77 51.9
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 4.8e-13 77.4 60 58.3
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 6.3e-13 77.0 50 70.0
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 8.2e-13 76.6 43 79.1
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.1e-12 76.3 59 64.4
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.8e-12 75.5 47 70.2
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.1e-12 74.3 54 66.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.6e-11 72.4 42 76.2
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.6e-11 72.4 42 76.2
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.0e-11 72.0 56 67.9
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.3e-10 69.3 42 71.4
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 8.0e-08 60.1 31 77.4


User provided reference genes

Program Settings