Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.5e-147 527.3 585 100.0
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 4.6e-109 399.4 600 78.7
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 6.1e-101 372.5 585 79.3
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 7.4e-99 365.5 583 77.0
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.2e-96 358.2 585 76.4
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.2e-96 358.2 585 74.9
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 2.6e-96 357.1 585 76.1
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.7e-95 354.4 583 76.7
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 8.5e-95 352.1 585 74.0
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 3.2e-94 350.1 583 76.0
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.2e-94 349.7 583 71.7
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 4.2e-94 349.7 583 68.3
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.6e-93 347.8 583 77.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.1e-93 347.4 585 72.6
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.0e-91 340.9 581 69.0
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 3.3e-91 340.1 581 75.7
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 9.7e-91 338.6 583 73.8
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 6.3e-90 335.9 583 72.9
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.1e-89 335.1 581 76.1
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.1e-89 335.1 583 74.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.8e-89 334.3 581 72.1
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.7e-87 327.8 595 61.0
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 5.0e-87 326.2 587 69.8
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.4e-86 324.7 585 74.7
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 7.2e-86 322.4 585 73.3
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 9.4e-86 322.0 583 73.6
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 9.4e-86 322.0 581 75.0
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 2.7e-85 320.5 585 73.2
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 1.0e-84 318.5 319 70.2
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.4e-84 318.2 583 70.2
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.8e-84 317.8 587 73.3
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 6.7e-84 315.8 583 70.0
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 2.0e-83 314.3 583 69.8
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 2.6e-83 313.9 589 72.7
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 3.3e-83 313.5 585 71.8
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 3.3e-83 313.5 583 69.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 5.7e-83 312.8 585 73.3
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 4.1e-81 306.6 589 72.0
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 2.0e-80 304.3 585 72.5
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 5.9e-80 302.8 561 78.8
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 9.4e-78 295.4 581 69.9
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 3.6e-77 293.5 561 66.1
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 8.0e-77 292.4 585 73.8
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 6.8e-76 289.3 583 65.9
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 9.7e-75 285.4 585 67.0
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 2.8e-74 283.9 586 58.5
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 4.8e-74 283.1 563 71.8
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 4.8e-74 283.1 581 72.1
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 6.3e-74 282.7 562 72.6
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.1e-73 282.0 503 74.2
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.1e-73 280.0 503 75.7
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 4.1e-73 280.0 588 65.3
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 5.3e-73 279.6 503 71.8
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 7.0e-73 279.3 313 66.5
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 7.7e-72 275.8 644 62.7
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 2.9e-71 273.9 528 71.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 6.5e-71 272.7 591 63.1
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.1e-70 271.9 602 69.6
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 2.5e-70 270.8 564 72.5
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 3.2e-70 270.4 585 66.0
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 4.2e-70 270.0 603 62.5
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 5.5e-70 269.6 503 62.6
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.6e-69 268.1 583 66.6
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.6e-69 266.9 583 51.5
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 6.1e-69 266.2 574 58.0
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 4.0e-68 263.5 591 64.0
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 4.0e-68 263.5 557 64.6
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.2e-67 261.9 584 68.8
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.3e-66 258.5 583 70.7
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 1.1e-65 255.4 583 68.8
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 4.5e-64 250.0 582 68.4
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 4.5e-64 250.0 587 68.1
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 5.0e-63 246.5 585 65.3
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 3.3e-62 243.8 630 64.6
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 2.8e-61 240.7 584 67.3
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 4.7e-61 240.0 583 63.8
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 4.7e-61 240.0 683 61.3
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.1e-61 239.6 584 67.3
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.5e-59 235.0 236 66.1
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 7.5e-59 232.6 558 40.7
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.7e-58 230.3 598 59.7
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 3.7e-58 230.3 583 66.9
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 4.1e-57 226.9 598 58.5
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 5.4e-57 226.5 296 67.2
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.6e-56 224.9 315 61.3
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 2.9e-55 220.7 446 74.2
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.9e-54 218.0 585 59.8
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 3.3e-54 217.2 319 59.6
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 5.6e-54 216.5 562 65.5
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.8e-53 214.2 583 67.9
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.6e-53 213.8 590 59.8
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 3.6e-53 213.8 586 63.7
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 1.5e-51 208.4 586 64.0
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 6.4e-50 203.0 588 63.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 2.4e-49 201.1 578 59.9
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 3.2e-49 200.7 583 65.9
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.1e-46 192.2 592 61.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.2e-45 188.7 222 60.8
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.4e-44 185.3 562 59.8
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 9.2e-41 172.6 593 54.3
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 2.7e-32 144.4 583 58.7
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 6.0e-32 143.3 543 58.2
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 6.6e-31 139.8 150 50.7
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 1.1e-30 139.0 198 59.6
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 6.8e-28 129.8 143 74.1
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 6.8e-28 129.8 143 74.1
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 6.8e-28 129.8 143 74.1
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 4.9e-26 123.6 130 51.5
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.3e-23 115.5 75 76.0
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.3e-23 115.5 75 76.0
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.3e-23 114.8 121 61.2
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 2.3e-23 114.8 75 76.0
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.7e-23 112.8 98 63.3
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 8.7e-23 112.8 75 74.7
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.1e-21 108.2 75 69.3
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 4.2e-17 94.0 53 83.0
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 3.5e-16 90.9 60 71.7
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 5.1e-15 87.0 262 27.1
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 7.3e-14 83.2 75 50.7
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.1e-12 79.3 147 39.5
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.8e-12 78.6 102 70.6
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 2.9e-10 71.2 234 45.7
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 6.4e-10 70.1 42 78.6
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 6.0e-08 63.5 40 70.0
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 4.3e-06 57.4 75 38.7


User provided reference genes

Program Settings