Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 3.5e-28 127.5 61 100.0
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 5.3e-24 113.6 56 94.6
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.6e-23 111.3 56 92.9
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.6e-23 111.3 56 92.9
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.0e-22 109.4 56 91.1
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.7e-22 108.6 56 91.1
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.7e-22 108.6 56 89.3
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.2e-22 108.2 56 91.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.9e-22 107.8 56 89.3
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.9e-22 107.8 56 91.1
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 3.8e-22 107.5 56 89.3
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.8e-22 107.5 56 89.3
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 3.8e-22 107.5 56 89.3
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 5.0e-22 107.1 56 87.5
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.5e-22 106.7 56 89.3
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.5e-22 106.7 56 89.3
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 8.5e-22 106.3 56 89.3
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 8.5e-22 106.3 56 85.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.5e-22 106.3 56 85.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.1e-21 105.9 56 85.7
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-21 105.9 56 85.7
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-21 105.9 56 85.7
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-21 105.9 56 85.7
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.1e-21 105.9 56 85.7
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.4e-21 105.5 56 87.5
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.4e-21 105.5 56 85.7
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.9e-21 105.1 56 85.7
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 2.5e-21 104.8 56 87.5
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 2.5e-21 104.8 56 87.5
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 2.5e-21 104.8 56 87.5
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.2e-21 104.4 56 87.5
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 4.2e-21 104.0 56 82.1
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.2e-21 104.0 56 85.7
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 5.5e-21 103.6 56 83.9
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 5.5e-21 103.6 56 83.9
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 5.5e-21 103.6 56 83.9
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.5e-21 103.6 56 83.9
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.5e-21 103.6 56 83.9
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 5.5e-21 103.6 56 83.9
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 5.5e-21 103.6 56 85.7
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 7.2e-21 103.2 56 83.9
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 7.2e-21 103.2 56 83.9
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.2e-21 103.2 56 83.9
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 85.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 9.3e-21 102.8 56 83.9
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.2e-20 102.4 56 83.9
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-20 102.4 56 83.9
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-20 102.4 56 83.9
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.2e-20 102.4 56 83.9
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.2e-20 102.4 56 82.1
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 82.1
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 82.1
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 83.9
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 82.1
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 82.1
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 83.9
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 83.9
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.6e-20 102.1 56 87.5
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 2.1e-20 101.7 56 82.1
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 2.1e-20 101.7 56 82.1
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.1e-20 101.7 56 82.1
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 2.1e-20 101.7 56 82.1
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 2.1e-20 101.7 56 82.1
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.1e-20 101.7 56 82.1
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.1e-20 101.7 56 83.9
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 2.7e-20 101.3 56 82.1
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 2.7e-20 101.3 56 82.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 2.7e-20 101.3 56 82.1
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 2.7e-20 101.3 56 82.1
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.6e-20 100.9 56 82.1
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.6e-20 100.9 56 82.1
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 3.6e-20 100.9 56 82.1
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 3.6e-20 100.9 56 82.1
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 6.1e-20 100.1 56 82.1
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 6.1e-20 100.1 56 80.4
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 6.1e-20 100.1 56 80.4
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 7.9e-20 99.8 56 83.9
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 7.9e-20 99.8 56 83.9
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 7.9e-20 99.8 56 80.4
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 7.9e-20 99.8 56 80.4
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.0e-19 99.4 56 80.4
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.0e-19 99.4 56 80.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 1.8e-19 98.6 56 80.4
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 3.0e-19 97.8 56 80.4
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.0e-19 97.8 56 80.4
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 3.9e-19 97.4 56 83.9
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 5.1e-19 97.1 56 78.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.1e-19 97.1 56 78.6
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.1e-19 97.1 56 78.6
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 5.1e-19 97.1 52 84.6
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 6.7e-19 96.7 56 80.4
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 6.7e-19 96.7 56 80.4
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 6.7e-19 96.7 56 80.4
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.1e-18 95.9 56 82.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.5e-18 95.5 56 78.6
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.5e-18 95.5 56 78.6
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.3e-17 92.4 48 85.4
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 2.8e-17 91.3 56 78.6
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 3.7e-17 90.9 55 76.4
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.8e-17 90.5 56 76.8
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 6.3e-17 90.1 56 75.0
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 6.3e-17 90.1 56 75.0
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 8.2e-17 89.7 56 75.0
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 8.2e-17 89.7 56 73.2
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 8.2e-17 89.7 56 75.0
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 8.2e-17 89.7 55 74.5
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 3.1e-16 87.8 56 75.0
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.1e-16 87.8 55 74.5
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 4.1e-16 87.4 56 78.6
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 5.3e-16 87.0 56 73.2
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 5.3e-16 87.0 56 73.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 5.3e-16 87.0 56 71.4
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.2e-15 85.9 56 73.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.0e-14 82.8 51 72.5
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.0e-14 82.8 51 72.5
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 2.9e-14 81.3 51 72.5
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.8e-14 80.9 51 70.6
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 5.0e-14 80.5 51 70.6
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.2e-12 75.9 51 68.6
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 5.1e-11 70.5 52 55.8
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 6.7e-11 70.1 41 80.5
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.3e-10 67.8 38 81.6
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.3e-10 67.8 55 61.8
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 5.7e-10 67.0 37 83.8
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.3e-09 65.9 40 72.5


User provided reference genes

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