Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 4.9e-293 1010.4 502 100.0
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 4.8e-232 807.7 510 76.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 7.5e-225 783.9 509 75.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.7e-224 782.7 541 70.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.7e-224 781.6 541 70.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 8.9e-218 760.4 515 71.3
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 8.9e-218 760.4 523 70.9
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 7.5e-217 757.3 523 70.6
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.3e-216 756.5 517 71.6
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.3e-216 756.5 525 70.1
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.8e-215 752.7 525 69.9
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.7e-214 748.8 524 71.2
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 6.6e-213 744.2 522 68.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.5e-212 743.0 513 69.8
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.2e-207 723.8 509 68.8
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.2e-207 723.8 509 68.8
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-205 720.3 509 68.2
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-205 720.3 509 68.2
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 8.1e-203 710.7 509 66.4
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 5.2e-202 708.0 511 66.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.9e-202 707.2 520 67.7
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.9e-202 707.2 520 67.7
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.5e-201 706.4 510 65.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.8e-201 704.5 514 67.3
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-200 703.0 514 67.1
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.7e-200 703.0 512 66.2
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.2e-200 702.6 507 66.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.2e-200 702.6 518 65.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 8.3e-200 700.7 507 67.7
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.2e-199 698.7 508 65.4
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 4.1e-199 698.4 509 66.4
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 4.1e-199 698.4 515 65.8
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 7.1e-199 697.6 512 66.0
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.2e-199 697.2 512 66.2
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.6e-198 696.4 508 66.1
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.1e-198 696.0 523 65.8
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.7e-198 695.7 508 65.9
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.7e-198 695.7 509 66.0
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.1e-197 691.4 509 66.4
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.3e-196 688.7 519 64.5
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.3e-196 688.3 509 65.8
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.6e-196 688.0 520 64.4
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.1e-195 686.0 507 65.5
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.1e-195 686.0 509 64.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.8e-195 685.6 514 62.6
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.6e-195 685.3 511 65.2
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 4.0e-194 681.8 511 64.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 5.2e-194 681.4 511 64.2
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.0e-193 679.5 516 64.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 7.6e-193 677.6 522 64.2
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 9.9e-193 677.2 530 61.7
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.7e-192 676.4 504 64.9
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.2e-192 676.0 501 65.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.2e-192 676.0 538 61.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 6.4e-192 674.5 528 61.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 6.4e-192 674.5 537 61.3
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 8.4e-192 674.1 500 65.8
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 3.2e-191 672.2 530 61.5
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 3.2e-191 672.2 520 64.0
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-190 670.2 529 61.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.2e-190 670.2 526 61.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 2.7e-190 669.1 537 61.1
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.8e-190 667.5 514 62.6
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 7.8e-190 667.5 500 65.0
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.3e-189 666.0 541 59.7
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.1e-189 664.8 517 64.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 8.7e-189 664.1 509 63.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.5e-188 663.3 530 60.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.9e-188 662.9 513 62.0
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.9e-188 662.9 503 63.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.6e-188 661.4 538 60.4
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 5.6e-188 661.4 510 62.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.6e-187 658.7 504 62.9
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.2e-187 657.9 513 62.8
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.6e-185 652.5 511 62.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 5.8e-185 651.4 510 61.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.6e-185 651.0 509 63.9
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.7e-184 649.8 520 60.4
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 4.9e-184 648.3 505 62.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.4e-183 646.7 500 61.4
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.4e-183 646.7 506 61.7
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.1e-183 644.4 510 63.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.2e-182 643.7 501 61.3
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.2e-182 643.7 477 64.6
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.0e-182 641.3 502 62.5
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 6.0e-182 641.3 515 61.4
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.0e-181 640.6 517 61.5
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.7e-181 639.8 519 61.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.1e-181 638.3 515 60.8
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.1e-181 638.3 515 60.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.3e-179 633.6 507 62.1
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.8e-179 632.5 495 64.2
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.8e-179 632.5 519 59.2
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.9e-178 627.9 525 58.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 5.8e-177 624.8 529 58.8
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.9e-175 619.8 499 59.5
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 6.7e-173 611.3 455 62.0
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 9.6e-172 607.4 512 58.4
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.1e-171 606.3 459 61.0
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.1e-171 606.3 508 60.0
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 4.8e-171 605.1 515 57.5
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.4e-167 592.8 456 61.0
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.4e-167 592.8 454 61.9
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 7.1e-167 591.3 514 55.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.1e-166 589.7 465 60.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 4.3e-164 582.0 412 65.0
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.0e-160 570.9 393 67.4
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-160 570.5 440 60.2
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.4e-159 567.0 446 62.8
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.3e-157 560.5 468 60.7
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 5.1e-149 531.9 382 63.6
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-148 530.0 424 60.6
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 3.8e-144 515.8 311 75.2
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.5e-143 513.1 444 55.9
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.0e-140 503.4 311 74.6
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 5.5e-135 485.3 291 74.6
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 9.7e-132 474.6 311 69.1
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.8e-130 470.3 303 71.0
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.6e-126 457.2 470 48.5
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.1e-119 434.5 382 55.2
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.0e-117 426.0 292 64.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 6.1e-110 402.1 241 77.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 5.4e-106 389.0 452 43.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.2e-105 387.9 515 40.6
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 4.0e-101 372.9 238 72.3
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.6e-100 370.2 246 68.7
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 6.8e-93 345.5 514 41.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.5e-84 317.8 339 49.9
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.6e-84 317.0 310 51.9
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.2e-81 308.1 198 71.7
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.6e-81 307.8 216 67.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 4.6e-81 306.2 201 70.6
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.4e-74 283.9 270 55.6
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.5e-63 247.3 166 68.1
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-56 224.9 189 59.8
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 3.9e-56 223.4 189 59.8
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 9.6e-55 218.8 211 54.5
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 6.4e-51 206.1 189 56.1
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-50 204.5 140 65.0
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.9e-50 204.5 140 65.0
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 4.2e-50 203.4 124 71.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-49 200.3 434 29.0
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.3e-48 198.4 156 62.8
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.4e-45 188.3 189 48.1
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.9e-39 167.9 106 67.9
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-37 162.2 109 66.1
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-35 154.8 253 36.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-35 154.5 166 50.0
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 2.9e-35 154.1 156 48.1
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 8.5e-35 152.5 167 48.5
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 2.5e-34 151.0 162 46.9
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-32 145.2 257 36.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 4.1e-29 133.7 76 75.0
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 4.1e-29 133.7 76 75.0
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.5e-28 131.7 98 63.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.9e-27 127.5 159 47.8
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.2e-26 124.0 101 60.4
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 7.2e-26 122.9 98 60.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 9.4e-26 122.5 85 63.5
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-18 99.0 72 65.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-16 90.9 59 66.1
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 7.4e-15 86.3 88 50.0
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.6e-07 61.2 34 85.3
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 6.3e-06 56.6 35 62.9
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 6.3e-06 56.6 35 62.9


User provided reference genes

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