Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 2583.9 1324 100.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1724.9 1411 65.3
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1715.3 1400 65.9
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1642.9 1368 64.5
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1500.0 1382 58.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1437.9 1436 54.5
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1427.5 1350 56.1
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1426.4 1348 57.6
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1423.3 1350 56.2
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1421.8 1371 55.8
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1421.8 1338 56.6
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1420.6 1350 56.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1416.4 1373 56.7
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1403.7 1372 56.0
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1392.5 1375 56.3
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1389.4 1354 55.9
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1388.2 1414 54.4
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1387.9 1372 55.2
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1387.9 1409 54.8
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1384.8 1355 55.6
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1382.1 1370 55.5
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1379.0 1373 55.1
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1377.1 1362 55.5
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1374.0 1332 55.9
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1371.7 1385 54.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1369.8 1383 54.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1369.0 1415 52.9
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1367.8 1355 54.5
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1358.2 1362 54.9
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1355.9 1401 53.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1344.7 1309 55.6
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1337.4 1318 56.1
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1333.2 1473 51.4
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1332.0 1308 55.0
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1325.5 1453 51.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1323.9 1376 52.3
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1319.3 1380 52.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1314.3 1374 53.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1312.7 1371 51.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1349 53.5
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1310.4 1375 53.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1307.7 1355 53.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1305.8 1379 52.1
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1303.1 1329 54.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1293.9 1334 53.7
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1290.4 1389 51.8
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1289.6 1374 52.3
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1288.9 1351 52.5
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1286.2 1364 52.9
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1283.9 1389 50.8
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1283.5 1358 51.9
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1282.7 1335 53.7
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1282.3 1391 52.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1278.8 1356 52.5
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1276.5 1333 52.9
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1276.2 1358 52.1
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1271.1 1348 52.0
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1267.7 1375 52.1
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1267.3 1371 50.8
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1264.2 1362 51.2
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1263.8 1362 52.2
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1257.7 1335 51.8
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1253.8 1333 51.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1250.7 1333 51.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1248.8 1335 51.8
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1246.5 1373 51.8
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1245.0 1333 51.5
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1237.6 1196 55.2
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1232.2 1334 52.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1219.9 1368 51.0
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1209.5 1348 50.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 0.0e+00 1190.6 1310 51.9
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1184.1 1114 57.1
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1169.1 1349 49.0
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1165.6 1535 45.5
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1151.0 1371 47.0
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1150.2 1371 48.7
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1102.4 1110 54.5
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1090.1 1575 43.3
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.1e-307 1060.4 1346 44.3
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 1.6e-282 976.9 1009 51.7
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.0e-281 974.2 1048 53.1
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.9e-280 969.9 1152 47.3
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-264 916.8 988 52.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.6e-256 889.8 1013 50.7
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 5.2e-233 812.4 815 52.5
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 2.9e-223 780.0 713 58.3
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 7.0e-222 775.4 729 54.6
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 9.2e-222 775.0 828 52.1
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 8.6e-220 768.5 825 52.6
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 2.4e-193 680.6 1318 35.8
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.0e-181 639.4 1379 33.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 8.7e-172 609.0 1420 31.5
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 2.5e-163 580.9 525 56.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 7.7e-152 542.7 596 52.0
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.8e-143 513.8 446 59.0
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.2e-141 508.8 443 58.2
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.0e-132 479.2 552 51.3
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.6e-128 465.3 539 50.6
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.3e-122 443.4 665 37.3
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.6e-120 438.7 1016 33.0
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.9e-119 434.5 395 56.7
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 2.8e-117 427.9 342 61.7
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-91 342.0 470 39.6
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-89 336.3 545 41.1
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 7.8e-88 330.1 277 59.6
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-86 326.2 813 33.0
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.3e-78 297.7 473 39.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.3e-74 286.2 378 44.7
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.6e-72 277.7 442 39.1
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.6e-64 251.1 366 41.0
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.3e-61 243.0 141 85.8
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.2e-61 240.7 162 72.8
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 9.3e-57 226.9 402 38.6
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 2.7e-56 225.3 254 48.4
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.7e-55 220.3 138 75.4
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.9e-54 219.2 358 38.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.0e-47 196.8 1182 23.7
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 9.7e-46 190.3 148 62.8
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 9.0e-44 183.7 238 45.8
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.7e-42 179.5 178 53.9
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 2.2e-42 179.1 241 41.5
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 5.5e-41 174.5 223 48.4
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 2.0e-38 166.0 137 59.9
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 4.1e-36 158.3 254 37.8
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.2e-35 156.8 175 48.6
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 3.4e-35 155.2 173 54.3
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.4e-31 143.3 208 42.3
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 9.7e-30 137.1 508 28.3
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 2.2e-29 136.0 133 54.9
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.1e-28 132.1 1054 23.2
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.5e-27 129.8 135 48.9
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 2.9e-26 125.6 287 31.0
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 4.4e-22 111.7 107 49.5
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.4e-22 111.7 77 67.5
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 5.7e-22 111.3 175 38.3
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.1e-20 107.1 151 44.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.1e-20 105.1 585 22.7
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 7.0e-20 104.4 81 61.7
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.5e-19 102.1 267 34.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.3e-18 100.1 93 55.9
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.7e-18 99.8 123 48.8
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 8.5e-18 97.4 100 49.0
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.2e-14 87.0 131 45.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.2e-14 87.0 95 48.4
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-14 86.7 61 65.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 2.6e-14 85.9 87 49.4
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 8.3e-13 80.9 94 48.9
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 9.1e-12 77.4 62 62.9
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 5.9e-11 74.7 141 39.7
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.3e-10 73.6 122 40.2
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-10 73.6 51 62.7
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.7e-10 73.2 66 60.6
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.2e-10 72.8 141 39.0
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.5e-09 70.1 132 37.1
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.5e-09 68.2 142 31.7
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 1.6e-08 66.6 95 43.2
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.1e-08 66.2 130 34.6
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 2.7e-08 65.9 111 42.3
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 4.7e-08 65.1 61 54.1
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 6.1e-08 64.7 111 41.4
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 2.0e-06 59.7 59 54.2
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 7.5e-06 57.8 94 36.2


User provided reference genes

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