Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.5e-188 663.3 494 100.0
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 6.7e-117 425.2 497 65.4
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 1.0e-104 384.8 496 60.7
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.9e-100 370.5 420 59.3
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 3.4e-97 359.8 420 64.8
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 5.1e-93 345.9 420 60.0
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.5e-92 343.6 335 63.3
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 5.7e-92 342.4 418 62.7
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 7.4e-92 342.0 334 66.5
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 7.4e-92 342.0 429 60.6
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.8e-91 339.3 342 60.5
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 8.2e-91 338.6 429 52.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.1e-90 338.2 424 51.2
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.1e-90 336.3 439 51.5
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.5e-89 334.3 355 62.3
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.6e-89 333.6 332 67.5
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 1.1e-87 328.2 343 60.9
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 7.2e-87 325.5 424 51.4
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 9.4e-87 325.1 430 52.1
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 2.1e-86 323.9 325 60.6
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.0e-85 321.6 365 55.6
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 2.3e-85 320.5 334 58.1
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 3.3e-84 316.6 417 51.1
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.3e-83 314.7 439 51.3
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 3.7e-83 313.2 366 54.9
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 6.3e-83 312.4 453 48.1
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 8.2e-83 312.0 426 50.2
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.3e-82 309.3 421 51.1
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.0e-81 307.4 330 54.8
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 7.7e-81 305.4 341 56.6
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 1.0e-80 305.1 430 50.9
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.0e-80 305.1 331 57.4
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 3.8e-80 303.1 433 48.3
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.8e-80 303.1 421 52.0
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.8e-80 303.1 336 57.4
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 8.5e-80 302.0 427 47.5
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 2.5e-79 300.4 327 58.7
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.5e-79 300.4 198 72.2
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 7.2e-79 298.9 418 52.2
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 7.2e-79 298.9 346 56.9
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.6e-78 297.7 420 54.3
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.1e-78 297.4 416 52.6
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 2.7e-78 297.0 357 51.3
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.6e-78 296.6 354 59.0
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 4.7e-78 296.2 331 56.5
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 8.0e-78 295.4 423 47.3
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.0e-77 295.0 334 54.8
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.8e-77 294.3 458 44.1
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.9e-77 293.1 348 53.2
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 5.2e-77 292.7 321 55.5
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 5.2e-77 292.7 348 53.2
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 6.7e-77 292.4 348 55.5
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 8.8e-77 292.0 195 70.8
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.1e-76 291.6 430 47.4
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.5e-76 291.2 334 56.6
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 2.0e-76 290.8 351 53.3
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 2.0e-76 290.8 351 53.3
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.6e-76 290.4 333 59.5
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.7e-75 287.7 334 53.9
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.7e-75 287.7 420 46.2
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.7e-75 287.7 322 55.9
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.8e-75 287.0 368 54.6
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 3.7e-75 286.6 331 54.7
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 3.7e-75 286.6 321 52.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 4.8e-75 286.2 336 60.7
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 6.3e-75 285.8 330 53.6
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 8.2e-75 285.4 378 53.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.8e-74 284.3 418 50.5
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.4e-74 283.9 423 48.0
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 4.1e-74 283.1 199 66.3
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 5.3e-74 282.7 314 57.0
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 7.0e-74 282.3 192 69.3
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 1.2e-73 281.6 353 56.7
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 1.2e-73 281.6 200 66.5
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 3.5e-73 280.0 421 47.3
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 3.5e-73 280.0 356 53.4
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 5.9e-73 279.3 402 54.0
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 7.7e-73 278.9 334 53.3
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.7e-72 277.7 342 56.7
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 2.2e-72 277.3 352 51.1
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 3.2e-71 273.5 330 53.3
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.2e-70 271.6 338 54.4
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 3.6e-70 270.0 344 57.0
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.0e-69 268.5 200 63.0
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.0e-69 268.5 421 46.3
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 3.0e-69 266.9 354 47.2
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 6.7e-69 265.8 343 47.2
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 8.8e-69 265.4 371 45.0
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 1.5e-68 264.6 350 50.0
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 7.5e-68 262.3 426 49.3
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.3e-67 261.5 334 56.0
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.7e-67 261.2 373 53.9
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 8.3e-67 258.8 329 51.4
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.4e-66 258.1 431 39.9
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 5.3e-66 256.1 334 55.4
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 2.7e-65 253.8 165 73.3
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 1.9e-63 247.7 351 45.0
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.4e-61 241.5 318 58.5
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 1.2e-60 238.4 164 68.3
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.5e-60 238.0 332 48.5
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.2e-59 234.2 356 45.2
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 6.3e-59 232.6 311 48.9
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.1e-58 229.9 358 44.7
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 9.1e-58 228.8 311 51.1
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 2.7e-57 227.3 323 47.7
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 2.8e-54 217.2 177 59.9
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 2.8e-54 217.2 177 59.9
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 4.7e-54 216.5 139 72.7
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.3e-48 197.6 338 44.1
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.9e-42 177.9 139 62.6
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 4.1e-42 176.8 606 33.2
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.7e-40 171.4 107 74.8
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.2e-38 165.2 328 48.2
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 6.0e-33 146.4 117 61.5
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 7.8e-33 146.0 90 75.6
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.2e-29 133.3 91 68.1
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.7e-24 118.2 178 34.3
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 1.7e-24 118.2 170 36.5
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.9e-24 117.1 143 36.4
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-21 109.0 329 30.7
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.2e-21 106.7 64 79.7
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.6e-20 104.4 294 38.1
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 5.4e-18 96.7 69 71.0
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.3e-16 92.0 62 72.6
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 3.0e-16 90.9 60 75.0
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-15 89.0 63 71.4
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 3.3e-15 87.4 82 50.0
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.9e-07 61.6 219 37.9
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 2.1e-06 58.2 173 49.1
AagrBONN_evm.TU.Sc2ySwM_117.3603 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.6e-06 57.4 92 28.3
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 4.8e-06 57.0 68 33.8


User provided reference genes

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