Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.5e-166 587.8 286 100.0
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 2.3e-125 452.6 300 73.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 5.0e-125 451.4 300 73.3
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 9.5e-124 447.2 303 72.3
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.1e-123 446.0 300 71.7
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.8e-123 445.7 300 71.7
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.4e-122 443.4 300 69.7
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 2.3e-122 442.6 300 71.3
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 3.0e-122 442.2 300 71.3
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 3.0e-122 442.2 300 71.3
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 8.9e-122 440.7 300 71.0
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 8.9e-122 440.7 300 71.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 8.9e-122 440.7 300 71.3
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.5e-121 439.9 300 71.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.5e-121 439.9 300 72.3
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.6e-121 439.1 300 71.0
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 4.4e-121 438.3 300 69.7
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.5e-121 437.6 300 70.7
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.3e-120 436.8 302 68.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.7e-120 436.4 300 70.7
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.7e-120 436.4 300 71.3
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.9e-120 435.6 300 70.3
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.9e-120 435.6 300 69.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 3.7e-120 435.3 300 70.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 3.7e-120 435.3 300 68.7
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.9e-120 434.9 300 71.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 6.4e-120 434.5 300 69.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 8.3e-120 434.1 299 70.2
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 8.3e-120 434.1 300 70.3
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 8.3e-120 434.1 300 70.7
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 8.3e-120 434.1 300 71.7
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 8.3e-120 434.1 300 70.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.4e-119 433.3 300 71.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.4e-119 433.3 300 71.3
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.4e-119 433.3 300 70.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.4e-119 432.6 300 71.0
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.4e-119 432.6 300 70.3
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.4e-119 432.6 300 70.3
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 3.2e-119 432.2 300 70.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 3.2e-119 432.2 300 70.7
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 3.2e-119 432.2 300 70.0
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 5.4e-119 431.4 300 70.7
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 5.4e-119 431.4 300 69.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 7.0e-119 431.0 300 69.7
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 9.2e-119 430.6 300 70.3
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.2e-118 430.3 300 69.3
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.2e-118 430.3 300 70.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.2e-118 430.3 300 69.7
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.6e-118 429.9 300 70.3
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.0e-118 429.5 300 69.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.7e-118 429.1 300 70.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.7e-118 429.1 300 69.3
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.7e-118 429.1 300 70.3
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.5e-118 428.7 300 69.7
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.5e-118 428.7 300 69.3
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 3.5e-118 428.7 300 70.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 4.6e-118 428.3 300 69.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 4.6e-118 428.3 300 70.7
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 5.9e-118 427.9 300 69.7
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 7.8e-118 427.6 300 69.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.3e-117 426.8 300 70.0
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.3e-117 426.8 300 69.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.3e-117 426.8 300 68.7
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.7e-117 426.4 297 71.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 2.3e-117 426.0 300 68.7
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 2.3e-117 426.0 300 68.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.0e-117 425.6 300 69.7
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.9e-117 425.2 300 68.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.9e-117 425.2 300 69.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.9e-117 425.2 300 68.3
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 6.6e-117 424.5 300 68.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 6.6e-117 424.5 300 68.7
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.1e-116 423.7 300 67.3
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 4.3e-116 421.8 300 67.3
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 5.6e-116 421.4 300 68.0
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 5.6e-116 421.4 300 68.3
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 9.5e-116 420.6 307 67.8
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 9.5e-116 420.6 321 65.7
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 9.5e-116 420.6 300 67.0
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 9.5e-116 420.6 305 68.2
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-115 420.2 307 67.4
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-115 420.2 307 67.4
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.2e-115 420.2 307 67.4
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.2e-115 420.2 307 67.8
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 1.2e-115 420.2 300 67.7
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-115 420.2 300 68.0
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.1e-115 419.5 307 67.1
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.1e-115 419.5 325 65.8
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 2.1e-115 419.5 300 68.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.8e-115 419.1 300 68.3
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 8.0e-115 417.5 305 68.2
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 8.0e-115 417.5 307 67.1
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.3e-114 416.0 307 66.8
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.1e-114 415.6 300 67.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 4.0e-114 415.2 300 66.0
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 5.2e-114 414.8 307 66.4
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 5.2e-114 414.8 302 67.9
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 8.9e-114 414.1 302 67.5
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.2e-113 413.7 300 67.0
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.5e-113 413.3 300 66.3
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 5.8e-113 411.4 304 66.1
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 2.4e-111 406.0 367 57.8
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 9.2e-111 404.1 300 64.0
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.7e-109 399.8 300 64.3
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 3.0e-109 399.1 300 65.0
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 2.3e-106 389.4 301 64.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 6.8e-106 387.9 300 63.3
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 6.8e-106 387.9 300 63.3
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.2e-105 387.1 300 63.0
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.0e-105 386.3 300 63.0
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 7.5e-105 384.4 388 53.1
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.3e-104 383.6 303 61.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 4.1e-103 378.6 306 60.5
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.1e-100 370.5 303 59.4
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 1.4e-98 363.6 301 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 6.6e-93 344.7 286 59.8
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.5e-89 333.6 300 59.3
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 6.6e-85 318.2 303 52.5
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 5.6e-84 315.1 236 65.7
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 4.4e-81 305.4 256 60.9
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 9.0e-74 281.2 221 61.5
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.9e-68 263.5 220 61.4
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.6e-67 260.4 221 59.7
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 4.9e-64 248.8 201 60.7
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 5.5e-55 218.8 175 66.3
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.0e-53 214.5 155 66.5
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 9.7e-52 208.0 120 79.2
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.3e-51 207.6 149 69.8
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.8e-50 203.8 163 62.6
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.9e-47 193.7 149 63.1
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.5e-41 174.1 292 40.4
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.1e-38 162.2 80 90.0
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 5.2e-37 159.1 141 56.0
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 6.7e-37 158.7 83 84.3
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.0e-36 157.1 88 80.7
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.6e-36 156.8 79 88.6
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 5.7e-36 155.6 80 86.2
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.1e-34 149.4 124 58.9
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 3.5e-33 146.4 304 33.9
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.2e-30 137.9 307 33.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.0e-29 134.8 79 79.7
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 1.3e-24 117.9 82 65.9
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.2e-23 112.8 58 86.2
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 8.0e-22 108.6 91 58.2
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.1e-18 98.2 296 28.4
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.9e-16 90.1 54 72.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.5e-15 87.8 200 33.0
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 4.5e-09 66.2 187 28.9


User provided reference genes

Program Settings