Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 3.3e-130 468.4 236 100.0
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 3.2e-93 345.5 238 75.2
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.1e-80 303.9 289 59.2
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.8e-75 284.3 235 62.1
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.7e-73 280.0 232 67.2
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-71 273.5 235 59.6
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 5.0e-70 268.5 239 61.9
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 2.5e-69 266.2 230 60.0
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 9.4e-69 264.2 243 57.6
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 9.4e-69 264.2 234 59.8
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 3.6e-68 262.3 234 59.4
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 4.7e-68 261.9 234 58.5
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.4e-67 260.4 243 58.8
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.4e-67 260.4 234 59.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.4e-67 260.4 242 55.8
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 1.5e-66 256.9 242 55.4
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 6.3e-65 251.5 234 56.8
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.8e-64 250.0 227 60.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 2.4e-64 249.6 237 54.0
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.4e-64 249.6 229 58.1
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 4.1e-64 248.8 237 54.9
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.3e-64 248.4 236 56.8
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.0e-63 246.5 241 56.8
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.5e-63 245.7 236 56.4
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 4.5e-63 245.4 237 54.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.9e-63 245.0 240 57.9
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 7.7e-63 244.6 238 55.9
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.7e-62 243.4 242 55.0
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 5.0e-62 241.9 234 56.8
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.1e-61 240.7 242 55.8
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.5e-61 240.4 267 52.4
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.2e-61 239.2 241 54.4
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 4.2e-61 238.8 241 53.1
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 9.4e-61 237.7 242 55.4
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.2e-60 237.3 208 59.1
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.2e-60 237.3 242 53.7
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 4.7e-60 235.3 239 53.6
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.7e-60 235.3 228 56.1
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 6.1e-60 235.0 240 53.3
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 8.0e-60 234.6 234 54.7
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.0e-59 234.2 259 51.4
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.4e-59 233.8 243 55.1
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 6.7e-59 231.5 242 52.1
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.3e-58 229.2 242 51.7
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 7.5e-58 228.0 237 49.4
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.3e-57 227.3 208 59.1
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-56 224.2 202 57.4
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.1e-56 224.2 242 50.4
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.1e-56 222.6 257 51.0
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.1e-56 222.6 243 51.0
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-55 219.9 224 53.1
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 4.5e-55 218.8 230 51.7
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 5.9e-55 218.4 203 56.7
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.3e-54 217.2 243 52.3
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.7e-54 216.9 230 51.7
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.1e-53 214.2 234 48.3
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.1e-53 214.2 230 51.3
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.9e-53 213.4 235 52.8
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.5e-53 213.0 238 52.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 3.2e-53 212.6 237 52.3
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.5e-53 211.8 201 55.2
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.2e-52 210.7 239 53.6
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.6e-52 210.3 225 51.1
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.6e-52 210.3 225 51.1
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.1e-52 209.9 242 51.7
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.6e-52 209.1 231 50.6
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 4.7e-52 208.8 244 47.5
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.7e-52 208.8 227 51.1
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.7e-52 208.8 244 51.2
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 6.1e-52 208.4 242 50.0
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.0e-52 208.0 204 53.4
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.0e-52 208.0 204 53.4
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.0e-51 206.1 201 51.7
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 3.0e-51 206.1 237 51.5
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-51 205.7 203 53.7
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.8e-51 204.5 203 53.7
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.6e-50 203.0 226 50.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.4e-50 202.2 201 51.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.4e-50 202.2 228 51.8
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 7.5e-50 201.4 234 46.2
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.7e-49 200.3 239 49.4
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 4.8e-49 198.7 227 49.8
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 8.3e-49 198.0 238 45.8
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.4e-48 195.3 201 52.2
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 7.0e-48 194.9 232 48.3
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 7.0e-48 194.9 240 49.6
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.2e-47 194.1 237 48.1
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.7e-47 193.0 180 53.3
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 2.7e-47 193.0 226 47.3
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 3.5e-47 192.6 237 47.3
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 7.7e-47 191.4 174 58.0
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.0e-46 191.0 234 48.3
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 5.0e-46 188.7 205 57.1
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.1e-45 187.6 225 47.6
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.1e-45 187.6 241 48.5
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.5e-45 187.2 233 47.2
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.5e-45 186.4 235 47.7
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 5.5e-45 185.3 231 47.6
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 5.5e-45 185.3 225 47.1
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 5.5e-45 185.3 240 47.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 4.7e-44 182.2 203 50.7
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.4e-43 180.6 207 50.7
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 6.8e-43 178.3 172 56.4
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 8.8e-43 177.9 237 46.8
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 8.8e-43 177.9 242 45.9
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.2e-42 177.6 235 44.7
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 5.7e-42 175.3 237 42.2
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 5.7e-42 175.3 232 43.5
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-41 173.3 206 48.5
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 3.7e-41 172.6 237 45.1
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-39 166.4 172 51.7
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 4.5e-39 165.6 226 43.8
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.0e-38 164.5 209 48.3
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 2.9e-38 162.9 241 45.6
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 8.6e-38 161.4 244 41.8
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.5e-37 160.6 165 47.9
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.9e-37 160.2 242 40.5
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-36 156.4 233 41.2
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.6e-36 156.0 120 64.2
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 2.6e-34 149.8 187 51.3
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 2.6e-34 149.8 230 43.0
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 8.3e-33 144.8 236 41.9
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.1e-32 144.4 236 41.1
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 2.4e-32 143.3 168 50.6
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.7e-30 137.1 243 39.5
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.3e-30 136.7 230 40.4
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 6.6e-30 135.2 234 36.8
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 8.6e-30 134.8 109 58.7
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-29 133.3 184 42.9
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.5e-29 133.3 204 39.7
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.2e-28 131.0 243 36.2
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 4.7e-28 129.0 243 35.8
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-26 124.4 181 44.8
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 9.8e-26 121.3 195 37.4
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.2e-25 120.2 99 66.7
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.3e-22 110.2 169 40.2
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.1e-19 101.3 236 31.8
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 8.9e-19 98.2 92 59.8
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-18 97.8 140 41.4
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 2.0e-18 97.1 160 38.1
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 3.4e-18 96.3 151 40.4
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 3.7e-17 92.8 151 41.1
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.2e-16 89.7 195 34.9
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-15 87.8 120 39.2
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 6.0e-15 85.5 78 55.1
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.8e-15 85.1 93 47.3
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-14 84.7 93 48.4
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.1e-14 82.4 87 52.9
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-13 80.9 87 52.9
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 3.4e-10 69.7 53 62.3
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 5.8e-10 68.9 65 58.5
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.7e-09 67.4 149 31.5
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-09 67.0 65 56.9
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.7e-09 66.2 42 81.0
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.7e-09 66.2 49 73.5
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.4e-09 65.5 98 44.9


User provided reference genes

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