Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.2e-58 227.3 116 100.0
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.3e-43 178.3 92 98.9
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.9e-28 128.3 120 60.8
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 9.7e-27 123.6 96 69.8
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 2.2e-26 122.5 110 60.0
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 6.3e-26 120.9 102 66.7
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 5.3e-25 117.9 118 60.2
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.2e-23 112.5 118 60.2
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 6.5e-23 110.9 114 59.6
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.0e-20 103.6 117 57.3
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.3e-20 102.4 120 55.0
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.0e-20 102.1 109 53.2
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 3.0e-20 102.1 114 56.1
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.0e-20 102.1 120 55.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 6.8e-20 100.9 102 55.9
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.6e-19 99.0 114 51.8
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.6e-19 99.0 102 54.9
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.4e-19 98.6 113 54.9
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.4e-19 98.6 114 53.5
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.4e-19 98.6 114 52.6
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 7.5e-19 97.4 115 54.8
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 7.5e-19 97.4 89 58.4
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 9.7e-19 97.1 110 49.1
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.3e-18 96.7 111 51.4
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.7e-18 96.3 108 50.0
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.2e-18 95.9 102 55.9
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 4.8e-18 94.7 86 55.8
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 6.3e-18 94.4 108 49.1
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 8.3e-18 94.0 98 54.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.4e-17 93.2 86 54.7
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.4e-17 92.4 79 55.7
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 3.1e-17 92.0 103 50.5
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.1e-17 92.0 104 49.0
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.3e-17 91.3 104 44.2
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 7.0e-17 90.9 97 50.5
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 9.1e-17 90.5 86 52.3
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 9.1e-17 90.5 99 50.5
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 9.1e-17 90.5 88 54.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.2e-16 90.1 87 50.6
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.2e-16 90.1 105 49.5
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.2e-16 90.1 99 55.6
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.5e-16 88.6 78 52.6
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.5e-16 88.6 94 45.7
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.9e-16 87.8 94 52.1
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 5.9e-16 87.8 85 54.1
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 5.9e-16 87.8 77 57.1
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 7.7e-16 87.4 103 57.3
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 7.7e-16 87.4 77 57.1
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.3e-15 86.7 104 48.1
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.7e-15 86.3 75 52.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.7e-15 86.3 90 51.1
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.7e-15 86.3 92 54.3
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-15 85.9 84 56.0
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 2.9e-15 85.5 93 51.6
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.8e-15 85.1 72 59.7
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 5.0e-15 84.7 75 57.3
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 5.0e-15 84.7 68 60.3
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 5.0e-15 84.7 111 48.6
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 5.0e-15 84.7 96 54.2
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.0e-15 84.7 92 57.6
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 5.0e-15 84.7 123 44.7
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 6.5e-15 84.3 70 55.7
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 6.5e-15 84.3 106 50.9
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 6.5e-15 84.3 115 47.0
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 8.5e-15 84.0 86 47.7
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 8.5e-15 84.0 119 44.5
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-14 83.6 97 47.4
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.5e-14 83.2 91 49.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.5e-14 83.2 97 45.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.9e-14 82.8 92 50.0
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.9e-14 82.8 110 42.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.9e-14 82.8 88 48.9
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.9e-14 82.8 85 44.7
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.9e-14 82.8 92 56.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.9e-14 82.8 70 54.3
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.9e-14 82.8 68 55.9
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.5e-14 82.4 83 45.8
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.5e-14 82.4 92 45.7
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 3.2e-14 82.0 96 47.9
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.2e-14 82.0 96 47.9
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 4.2e-14 81.6 106 48.1
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 4.2e-14 81.6 105 49.5
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 4.2e-14 81.6 72 55.6
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 5.5e-14 81.3 105 46.7
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 5.5e-14 81.3 70 52.9
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 5.5e-14 81.3 110 44.5
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 9.4e-14 80.5 75 60.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 9.4e-14 80.5 103 47.6
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 9.4e-14 80.5 103 47.6
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.2e-13 80.1 103 48.5
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.2e-13 80.1 78 53.8
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.2e-13 80.1 64 57.8
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.1e-13 79.3 104 46.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.1e-13 79.3 74 58.1
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.1e-13 79.3 74 58.1
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.1e-13 79.3 101 50.5
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.6e-13 78.6 84 50.0
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.6e-13 78.6 102 41.2
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.7e-13 78.2 96 45.8
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.7e-13 78.2 89 52.8
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.1e-13 77.8 93 47.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 8.0e-13 77.4 89 47.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.4e-12 76.6 112 44.6
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.8e-12 76.3 88 46.6
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-12 76.3 74 56.8
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.8e-12 76.3 94 45.7
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.8e-12 76.3 94 45.7
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.8e-12 76.3 90 41.1
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 3.0e-12 75.5 61 60.7
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 3.0e-12 75.5 45 71.1
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.0e-12 75.1 95 43.2
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 6.8e-12 74.3 74 54.1
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.2e-11 73.6 72 54.2
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.2e-11 73.6 80 46.2
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.2e-11 73.6 92 47.8
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.5e-11 73.2 81 49.4
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 2.0e-11 72.8 101 44.6
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.0e-11 72.8 61 59.0
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.0e-11 72.8 61 59.0
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 2.0e-11 72.8 71 56.3
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 2.0e-11 72.8 65 52.3
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.6e-11 72.4 72 50.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.6e-11 72.4 115 47.0
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 3.4e-11 72.0 97 47.4
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 7.5e-11 70.9 67 56.7
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 7.5e-11 70.9 90 47.8
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 9.8e-11 70.5 60 53.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.7e-10 69.7 67 50.7
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.7e-10 69.7 60 55.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.7e-10 69.7 76 53.9
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.2e-10 69.3 65 53.8
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 2.8e-10 68.9 92 40.2
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 2.8e-10 68.9 61 55.7
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 3.7e-10 68.6 101 45.5
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 6.3e-10 67.8 111 41.4
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-09 67.0 73 49.3
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.8e-09 66.2 67 50.7
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 1.8e-09 66.2 87 47.1
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 3.1e-09 65.5 73 46.6
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 7.0e-09 64.3 42 66.7
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 7.0e-09 64.3 88 48.9
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.2e-08 63.5 81 42.0
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.0e-07 60.5 40 67.5
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 2.3e-07 59.3 48 54.2
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.6e-07 57.8 57 47.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 8.6e-07 57.4 71 47.9
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.5e-06 55.8 90 47.8


User provided reference genes

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