Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.2e-48 195.3 99 100.0
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.7e-25 118.6 88 70.5
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.5e-23 112.8 96 60.4
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.9e-23 112.5 99 60.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 2.5e-23 112.1 93 62.4
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 4.3e-23 111.3 86 68.6
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 7.3e-23 110.5 93 60.2
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 8.0e-22 107.1 90 53.3
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 3.1e-21 105.1 93 59.1
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 5.2e-21 104.4 98 55.1
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.2e-20 103.2 87 57.5
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 9.8e-20 100.1 94 57.4
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.9e-19 98.6 86 59.3
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 3.7e-19 98.2 94 57.4
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 6.4e-19 97.4 93 51.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 6.4e-19 97.4 88 58.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 8.3e-19 97.1 99 53.5
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 8.3e-19 97.1 96 55.2
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.4e-18 96.3 101 55.4
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.2e-18 95.1 94 55.3
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 5.4e-18 94.4 96 52.1
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 5.4e-18 94.4 84 54.8
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.0e-18 94.0 94 54.3
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 7.0e-18 94.0 100 52.0
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.2e-17 93.2 99 52.5
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.0e-17 92.4 94 53.2
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.0e-17 92.4 94 53.2
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 3.5e-17 91.7 95 48.4
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.6e-17 91.3 91 49.5
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 6.0e-17 90.9 94 46.8
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 6.0e-17 90.9 93 55.9
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.8e-17 90.5 94 52.1
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.0e-16 90.1 92 52.2
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.0e-16 90.1 88 50.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.0e-16 90.1 97 50.5
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.3e-16 89.7 102 50.0
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.7e-16 89.4 83 55.4
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.3e-16 89.0 89 55.1
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 6.6e-16 87.4 89 52.8
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 8.6e-16 87.0 99 48.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 8.6e-16 87.0 91 49.5
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.5e-15 86.3 92 51.1
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.5e-15 86.3 91 52.7
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.9e-15 85.9 99 47.5
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 2.5e-15 85.5 87 52.9
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.5e-15 85.5 90 51.1
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 3.3e-15 85.1 101 50.5
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 3.3e-15 85.1 93 53.8
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 5.6e-15 84.3 92 53.3
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 9.5e-15 83.6 98 49.0
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 9.5e-15 83.6 98 49.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.2e-14 83.2 101 47.5
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.2e-14 83.2 104 49.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.6e-14 82.8 89 50.6
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.6e-14 82.8 90 52.2
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.6e-14 82.8 94 46.8
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 2.1e-14 82.4 102 47.1
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 2.1e-14 82.4 102 47.1
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 2.1e-14 82.4 102 47.1
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.1e-14 82.4 92 53.3
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.1e-14 82.4 89 50.6
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.1e-14 82.4 66 59.1
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 2.8e-14 82.0 102 47.1
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.8e-14 82.0 99 46.5
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 3.6e-14 81.6 102 46.1
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 3.6e-14 81.6 102 46.1
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 3.6e-14 81.6 61 63.9
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.6e-14 81.6 91 50.5
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 4.7e-14 81.3 92 48.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 6.2e-14 80.9 102 47.1
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 6.2e-14 80.9 102 46.1
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 8.1e-14 80.5 100 48.0
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 8.1e-14 80.5 103 41.7
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.1e-13 80.1 94 52.1
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.1e-13 80.1 94 52.1
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.4e-13 79.7 89 47.2
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.4e-13 79.7 93 47.3
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 2.3e-13 79.0 99 50.5
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.3e-13 79.0 97 48.5
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 4.0e-13 78.2 100 45.0
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 8.9e-13 77.0 94 48.9
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 8.9e-13 77.0 97 45.4
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-12 76.6 102 45.1
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.2e-12 76.6 102 45.1
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 1.2e-12 76.6 54 61.1
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.5e-12 76.3 88 52.3
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.5e-12 76.3 93 46.2
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.5e-12 76.3 98 44.9
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 1.5e-12 76.3 100 46.0
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.0e-12 75.9 103 45.6
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.0e-12 75.9 103 45.6
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.0e-12 75.9 103 45.6
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.6e-12 75.5 96 46.9
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 3.4e-12 75.1 83 48.2
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.4e-12 75.1 94 48.9
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 4.4e-12 74.7 102 46.1
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 5.8e-12 74.3 90 41.1
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 5.8e-12 74.3 103 43.7
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 7.5e-12 73.9 100 45.0
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 9.9e-12 73.6 97 47.4
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.3e-11 73.2 48 70.8
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-11 73.2 103 39.8
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.7e-11 72.8 98 48.0
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.9e-11 72.0 94 47.9
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.7e-11 71.6 100 44.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.7e-11 71.6 100 44.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 8.3e-11 70.5 83 42.2
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 1.1e-10 70.1 60 56.7
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.4e-10 69.7 84 56.0
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 3.2e-10 68.6 102 42.2
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 7.1e-10 67.4 102 42.2
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 7.1e-10 67.4 102 42.2
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 7.1e-10 67.4 102 42.2
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 7.1e-10 67.4 88 46.6
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 9.2e-10 67.0 102 42.2
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 9.2e-10 67.0 102 42.2
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.2e-09 66.6 73 50.7
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.2e-09 66.6 60 53.3
unitig_744.g24543 Utricularia gibba HOM05D005059 ORTHO05D004248 1.6e-09 66.2 95 41.1
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.5e-09 65.1 90 44.4
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 3.5e-09 65.1 69 50.7
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 1.0e-08 63.5 88 40.9
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 1.0e-08 63.5 51 60.8
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 1.3e-08 63.2 58 55.2
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 1.7e-08 62.8 101 40.6
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 6.6e-08 60.8 73 46.6
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 6.6e-08 60.8 59 54.2
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 8.6e-08 60.5 92 38.0
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.5e-07 59.7 94 38.3
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 1.5e-07 59.7 88 43.2
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 3.3e-07 58.5 94 38.3
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 3.3e-07 58.5 90 38.9
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 4.3e-07 58.2 99 34.3
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 4.3e-07 58.2 96 36.5
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 5.6e-07 57.8 100 35.0
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 9.5e-07 57.0 99 34.3
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 1.2e-06 56.6 94 38.3
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.6e-06 56.2 89 37.1
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.6e-06 56.2 81 34.6
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.8e-06 55.5 66 45.5
Carub.0001s1668 Capsella rubella HOM05D009829 ORTHO05D012418 3.6e-06 55.1 99 34.3
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 3.6e-06 55.1 100 40.0
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 4.7e-06 54.7 88 39.8
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 4.7e-06 54.7 59 45.8
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 4.7e-06 54.7 59 45.8
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 6.2e-06 54.3 59 45.8
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 6.2e-06 54.3 63 44.4


User provided reference genes

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