Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 3.1e-110 401.7 197 100.0
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.6e-90 336.3 194 80.9
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 7.3e-83 310.8 193 76.2
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 8.9e-81 303.9 193 72.5
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 8.9e-81 303.9 194 73.2
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.2e-80 303.5 193 72.0
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 3.4e-80 302.0 193 71.5
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 8.3e-79 297.4 193 69.9
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.1e-78 297.0 196 70.4
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.4e-78 295.8 193 71.5
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 4.1e-78 295.0 191 71.7
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.7e-76 289.7 190 70.5
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 2.3e-76 289.3 191 68.6
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 3.9e-76 288.5 190 70.5
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 8.6e-76 287.3 193 68.9
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.1e-75 287.0 192 69.3
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.1e-75 287.0 191 71.2
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.9e-75 286.2 191 66.5
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.5e-75 285.8 190 70.0
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 9.6e-75 283.9 191 67.5
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.7e-74 281.6 188 70.2
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.7e-74 281.6 191 68.6
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.1e-73 280.4 189 68.8
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.8e-73 279.6 183 69.4
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.8e-73 279.6 187 69.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.8e-73 279.6 189 69.8
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.1e-73 278.9 188 70.2
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 5.2e-73 278.1 188 69.7
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 5.2e-73 278.1 187 69.0
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 6.8e-73 277.7 188 67.6
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 6.8e-73 277.7 183 72.1
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 8.9e-73 277.3 188 69.7
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.0e-72 276.2 191 68.1
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 2.6e-72 275.8 188 68.6
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 3.4e-72 275.4 191 65.4
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 9.9e-72 273.9 189 68.8
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.3e-71 273.5 193 66.8
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 1.7e-71 273.1 192 68.2
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.2e-71 272.7 189 66.1
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 2.9e-71 272.3 191 69.1
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.8e-71 271.9 189 66.1
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 4.9e-71 271.6 190 68.4
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 8.4e-71 270.8 189 67.7
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 8.4e-71 270.8 188 68.6
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.1e-70 270.4 187 67.4
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.9e-70 269.6 185 69.2
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.9e-70 269.6 189 66.7
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 2.4e-70 269.2 189 65.6
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.2e-70 268.9 180 70.6
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 5.4e-70 268.1 200 64.5
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 5.4e-70 268.1 196 65.3
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 5.4e-70 268.1 190 67.4
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 7.1e-70 267.7 196 65.3
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 7.1e-70 267.7 194 66.5
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.6e-69 266.5 194 64.9
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.6e-69 266.5 188 67.6
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.6e-69 266.5 188 67.6
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 2.1e-69 266.2 190 66.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 2.1e-69 266.2 189 65.6
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 2.7e-69 265.8 186 68.3
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 7.8e-69 264.2 198 64.6
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.0e-68 263.8 196 64.3
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.0e-68 263.8 196 64.3
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 1.3e-68 263.5 193 63.2
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.7e-68 263.1 177 69.5
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.7e-68 263.1 188 67.0
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 5.1e-68 261.5 186 68.3
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 5.1e-68 261.5 176 70.5
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 8.7e-68 260.8 191 67.0
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 8.7e-68 260.8 167 70.7
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 8.7e-68 260.8 180 68.3
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.9e-67 259.6 195 62.1
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.9e-67 259.6 196 62.8
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 3.3e-67 258.8 167 70.1
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 5.6e-67 258.1 188 66.0
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.6e-66 256.5 188 63.3
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 2.8e-66 255.8 188 64.4
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 2.8e-66 255.8 194 61.3
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.2e-66 254.6 191 63.4
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.1e-65 253.8 189 61.9
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.4e-65 253.4 190 64.7
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.9e-62 243.0 201 59.2
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 3.5e-61 238.8 188 60.1
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.0e-60 235.7 177 63.8
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 1.9e-59 233.0 192 58.9
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.5e-59 232.6 186 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 6.9e-57 224.6 194 54.6
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 6.9e-57 224.6 165 66.1
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.2e-56 223.8 185 55.7
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 2.0e-56 223.0 146 69.2
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 6.9e-49 198.0 185 55.1
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 9.0e-49 197.6 187 52.4
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.0e-48 196.4 149 60.4
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.0e-44 184.1 190 48.9
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 3.3e-43 179.1 185 49.7
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 7.1e-38 161.4 111 63.1
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 3.4e-32 142.5 104 64.4
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 5.9e-32 141.7 85 80.0
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 1.9e-30 136.7 83 78.3
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.1e-27 127.5 78 78.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.8e-25 120.2 81 70.4
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 8.8e-20 101.3 144 45.1
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.5e-19 100.5 76 60.5
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.5e-19 100.5 76 60.5
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 4.4e-19 99.0 73 63.0
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 3.7e-18 95.9 92 52.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.3e-18 95.1 92 51.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 4.7e-13 79.0 171 31.6
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 3.3e-11 72.8 173 28.9
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.3e-11 72.8 151 29.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 9.7e-11 71.2 155 27.7
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.2e-10 70.1 181 28.7
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 2.2e-10 70.1 168 29.2
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 2.8e-10 69.7 172 32.0
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 2.8e-10 69.7 169 28.4
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.8e-10 69.7 178 26.4
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.8e-10 69.7 172 30.8
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 4.8e-10 68.9 172 29.1
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.1e-09 67.8 146 27.4
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.1e-09 67.8 175 27.4
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.1e-09 67.8 168 28.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.4e-09 67.4 172 29.1
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.4e-09 67.4 49 57.1
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.8e-09 67.0 168 28.0
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 3.1e-09 66.2 158 29.1
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 3.1e-09 66.2 172 30.2
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.1e-09 66.2 170 28.2
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 5.3e-09 65.5 187 27.8
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 9.1e-09 64.7 172 27.9
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 9.1e-09 64.7 137 31.4
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.6e-08 63.9 171 26.3
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.6e-08 63.9 172 27.3
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 3.5e-08 62.8 172 26.2
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.5e-08 62.8 172 27.3
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 4.5e-08 62.4 172 26.2
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 4.5e-08 62.4 172 26.7
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 4.5e-08 62.4 173 28.3
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 5.9e-08 62.0 189 27.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 7.7e-08 61.6 169 26.6
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 7.7e-08 61.6 172 26.2
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 7.7e-08 61.6 174 25.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.0e-07 61.2 173 27.2
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.0e-07 61.2 182 26.9
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.0e-07 61.2 182 26.9
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.0e-07 61.2 164 28.0
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.0e-07 61.2 188 26.6
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.3e-07 60.8 172 27.9
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.3e-07 60.8 173 27.2
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.7e-07 60.5 171 27.5
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.7e-07 60.5 173 27.2
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 2.2e-07 60.1 169 25.4
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.2e-07 60.1 177 28.2
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.2e-07 60.1 172 27.3
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.2e-07 60.1 170 25.3
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.9e-07 59.7 173 27.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 3.8e-07 59.3 170 27.6
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 3.8e-07 59.3 162 25.9
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 5.0e-07 58.9 169 25.4
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 5.0e-07 58.9 96 31.2
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 5.0e-07 58.9 173 26.0
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 5.0e-07 58.9 172 26.7
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 6.5e-07 58.5 166 27.7
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 8.5e-07 58.2 174 27.0
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 8.5e-07 58.2 145 25.5
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.1e-06 57.8 171 25.1
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.1e-06 57.8 169 24.9
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.1e-06 57.8 172 25.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.5e-06 57.4 174 25.9
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.5e-06 57.4 176 26.7
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.5e-06 57.4 170 26.5
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.9e-06 57.0 170 26.5
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.9e-06 57.0 167 25.1
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.5e-06 56.6 173 25.4
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.5e-06 56.6 162 25.9
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.5e-06 56.6 165 26.1
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 3.2e-06 56.2 173 25.4
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.2e-06 56.2 169 25.4
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 4.2e-06 55.8 169 24.9
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 4.2e-06 55.8 75 40.0
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 5.5e-06 55.5 138 27.5
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.5e-06 55.5 163 28.2
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 5.5e-06 55.5 174 24.1
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 5.5e-06 55.5 173 28.3


User provided reference genes

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