Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 8.3e-297 1023.1 568 100.0
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.2e-148 530.0 584 53.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.9e-123 447.2 650 45.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.6e-122 444.1 652 45.2
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.0e-121 441.4 579 49.4
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.3e-86 322.8 518 42.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 5.4e-78 296.2 588 38.3
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.7e-77 293.9 587 38.0
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.7e-76 291.2 571 37.1
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.7e-68 264.6 606 33.7
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.0e-65 255.4 579 34.9
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.0e-65 255.4 252 57.1
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 2.0e-64 251.1 575 33.9
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.3e-63 248.4 575 34.1
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 6.4e-63 246.1 578 33.2
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 7.0e-62 242.7 520 35.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 2.3e-60 237.7 367 41.7
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 4.3e-59 233.4 583 32.2
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 2.8e-58 230.7 640 37.7
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.6e-58 230.3 571 33.8
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.2e-56 225.3 574 32.2
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.2e-56 225.3 577 31.4
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 7.5e-56 222.6 612 34.8
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.3e-55 221.9 611 32.1
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.3e-55 221.9 612 34.3
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.7e-53 214.2 643 37.0
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.0e-53 213.0 615 33.2
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 7.8e-53 212.6 613 32.0
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 7.3e-51 206.1 571 31.0
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.1e-50 204.5 403 37.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.8e-50 204.1 582 32.6
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.8e-50 204.1 581 31.0
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 8.1e-50 202.6 513 32.7
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.3e-49 201.1 581 32.9
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.1e-46 192.2 591 30.5
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 6.0e-45 186.4 571 29.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 6.0e-45 186.4 662 29.3
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 3.0e-44 184.1 390 36.4
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.6e-42 177.2 661 28.0
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 3.4e-40 170.6 569 29.5
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 2.9e-39 167.5 631 30.3
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 4.9e-39 166.8 579 28.2
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 2.1e-37 161.4 579 29.4
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 3.5e-37 160.6 579 28.2
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 7.8e-37 159.5 669 26.9
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 3.0e-36 157.5 570 30.7
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 5.1e-36 156.8 598 28.9
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.5e-35 155.2 580 30.2
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.2e-34 149.8 260 38.1
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.1e-33 149.1 324 36.1
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 6.9e-33 146.4 739 26.1
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 9.0e-33 146.0 739 25.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 9.0e-33 146.0 377 32.1
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.0e-32 144.8 572 29.2
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.6e-32 144.4 239 37.7
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 4.4e-32 143.7 463 30.9
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.4e-32 143.7 712 25.7
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 5.8e-32 143.3 710 25.5
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 5.8e-32 143.3 710 24.8
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 7.6e-32 142.9 723 28.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 2.2e-31 141.4 253 39.1
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 2.2e-31 141.4 253 39.5
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 4.9e-31 140.2 571 28.9
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.1e-30 139.0 353 35.1
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.1e-30 139.0 726 26.0
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.1e-30 139.0 715 26.0
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.4e-30 138.7 712 25.4
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.2e-30 137.1 340 32.4
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 9.3e-30 136.0 331 32.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.2e-29 135.6 733 25.0
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.5e-29 134.0 695 25.2
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.5e-29 134.0 710 24.9
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 4.6e-29 133.7 708 25.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 7.9e-29 132.9 745 24.6
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 3.0e-28 131.0 378 31.5
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.5e-27 128.6 343 31.5
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.9e-27 128.3 272 33.1
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.5e-27 127.9 338 31.7
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 3.3e-27 127.5 221 33.5
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.6e-27 126.7 694 25.4
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-26 125.6 412 28.9
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 3.6e-26 124.0 336 32.7
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 5.3e-25 120.2 725 24.7
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.5e-24 118.6 773 24.1
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.0e-24 118.2 690 25.1
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 4.5e-24 117.1 599 24.7
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.3e-23 115.5 727 23.9
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 6.4e-23 113.2 718 24.7
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 6.4e-23 113.2 720 24.6
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.9e-22 111.7 774 23.8
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 3.2e-22 110.9 343 26.8
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.2e-21 109.0 185 36.2
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.6e-21 108.6 243 34.2
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 1.6e-21 108.6 698 24.4
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 3.5e-21 107.5 400 30.0
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 3.5e-21 107.5 236 33.1
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.9e-21 106.3 379 30.3
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.0e-20 105.9 751 24.1
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-20 105.5 700 24.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.8e-20 105.1 286 32.2
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 2.3e-20 104.8 705 23.5
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 8.7e-20 102.8 381 28.3
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 5.6e-19 100.1 146 37.0
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 9.6e-19 99.4 693 24.1
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.3e-18 99.0 401 27.2
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.8e-18 97.8 293 31.7
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.8e-18 97.8 293 31.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 2.8e-18 97.8 204 33.3
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.7e-18 97.4 710 24.1
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 3.7e-18 97.4 710 24.1
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 6.2e-18 96.7 693 24.2
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.5e-16 90.5 335 28.7
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.0e-15 89.4 740 22.8
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 3.8e-15 87.4 107 40.2
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.5e-14 83.6 524 32.3
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 2.1e-13 81.6 100 44.0
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 7.9e-13 79.7 105 44.8
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.4e-11 73.2 380 28.2
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.4e-11 73.2 380 28.2
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.1e-09 69.3 99 40.4
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 4.1e-09 67.4 249 31.7
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.6e-08 64.7 100 39.0
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.4e-08 64.3 427 25.3
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.4e-08 64.3 427 25.3
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 2.5e-06 58.2 95 33.7
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 4.2e-06 57.4 274 28.1
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.5e-06 57.0 102 40.2


User provided reference genes

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