Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01224 Erythranthe guttata HOM05D002846 ORTHO05D002692 1.9e-83 312.8 192 100.0
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 5.2e-33 145.2 170 50.6
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 7.5e-32 141.4 177 48.6
MSTRG.12286 Avicennia marina HOM05D002846 ORTHO05D002692 2.2e-28 129.8 172 51.2
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 1.8e-22 110.2 178 45.5
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 1.6e-21 107.1 171 39.8
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 1.6e-21 107.1 173 42.8
Oeu036754.1 Olea europaea HOM05D002846 ORTHO05D002692 3.8e-20 102.4 172 38.4
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 3.8e-20 102.4 179 42.5
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 8.6e-20 101.3 172 40.1
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 9.5e-19 97.8 186 41.9
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 2.8e-18 96.3 175 41.7
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.8e-18 96.3 176 38.6
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 3.6e-18 95.9 171 37.4
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 8.0e-18 94.7 175 39.4
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.8e-17 93.6 169 39.6
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 4.0e-17 92.4 149 41.6
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 5.2e-17 92.0 188 37.2
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 3.4e-16 89.4 146 41.8
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 4.4e-16 89.0 180 37.2
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 7.5e-16 88.2 175 37.7
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 1.3e-15 87.4 178 36.0
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 2.2e-15 86.7 176 35.8
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 4.9e-15 85.5 187 40.1
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 4.9e-15 85.5 183 39.9
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 8.3e-15 84.7 180 38.9
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 1.4e-14 84.0 181 40.3
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 1.4e-14 84.0 182 39.6
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 2.4e-14 83.2 176 37.5
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 2.4e-14 83.2 179 35.8
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 4.1e-14 82.4 179 34.6
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 4.1e-14 82.4 179 34.6
Sopen05g027000 Solanum pennellii HOM05D002846 ORTHO05D002692 4.1e-14 82.4 145 39.3
THA.LOC104808493 Tarenaya hassleriana HOM05D002846 ORTHO05D002692 4.1e-14 82.4 171 35.7
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 4.1e-14 82.4 179 35.2
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 5.4e-14 82.0 176 34.7
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 5.4e-14 82.0 173 38.2
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 9.2e-14 81.3 172 35.5
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 1.2e-13 80.9 183 36.6
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.6e-13 80.5 184 36.4
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 2.7e-13 79.7 176 38.6
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 3.5e-13 79.3 175 37.1
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 1.0e-12 77.8 175 37.1
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.0e-12 77.8 169 32.0
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 1.7e-12 77.0 180 35.6
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 1.7e-12 77.0 180 35.6
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 2.3e-12 76.6 190 35.3
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 2.3e-12 76.6 183 35.5
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 2.9e-12 76.3 180 35.0
BcaC01g03489 Brassica carinata HOM05D002846 ORTHO05D002692 3.8e-12 75.9 181 34.8
C03p51900 Brassica napus HOM05D002846 ORTHO05D002692 3.8e-12 75.9 181 34.8
BolC3t17475H Brassica oleracea HOM05D002846 ORTHO05D002692 3.8e-12 75.9 181 34.8
A03p42420 Brassica napus HOM05D002846 ORTHO05D002692 8.6e-12 74.7 181 34.3
BraA03t13394Z Brassica rapa HOM05D002846 ORTHO05D002692 8.6e-12 74.7 181 34.3
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 1.1e-11 74.3 178 41.0
BcaB04g19182 Brassica carinata HOM05D002846 ORTHO05D002692 1.1e-11 74.3 181 33.7
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 1.1e-11 74.3 179 37.4
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.1e-11 74.3 171 33.9
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.5e-11 73.9 179 32.4
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 1.5e-11 73.9 174 34.5
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 1.5e-11 73.9 194 35.6
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 1.9e-11 73.6 175 33.1
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 1.9e-11 73.6 181 35.4
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 1.9e-11 73.6 182 34.6
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 3.3e-11 72.8 169 33.1
BcaC09g49107 Brassica carinata HOM05D002846 ORTHO05D002692 3.3e-11 72.8 181 35.4
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 4.3e-11 72.4 179 31.8
Thhalv10021505m.g Eutrema salsugineum HOM05D002846 ORTHO05D002692 4.3e-11 72.4 181 34.3
C01p42460 Brassica napus HOM05D002846 ORTHO05D002692 5.6e-11 72.0 181 35.4
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 5.6e-11 72.0 179 36.3
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 7.3e-11 71.6 181 34.8
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 7.3e-11 71.6 181 34.8
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 7.3e-11 71.6 181 36.5
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 1.2e-10 70.9 188 37.2
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.6e-10 70.5 182 34.6
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 2.1e-10 70.1 186 34.9
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 2.1e-10 70.1 184 34.8
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 3.6e-10 69.3 180 31.7
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 4.7e-10 68.9 194 32.0
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 4.7e-10 68.9 180 36.7
AL3G35830 Arabidopsis lyrata HOM05D002846 ORTHO05D002692 6.1e-10 68.6 187 34.8
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 6.1e-10 68.6 176 35.2
PGR042G0859 Punica granatum HOM05D002846 ORTHO05D002692 6.1e-10 68.6 180 30.0
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 8.0e-10 68.2 150 36.0
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 1.0e-09 67.8 170 32.9
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 1.0e-09 67.8 173 32.9
MBI02_g23957_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 1.4e-09 67.4 168 33.9
PSO675G7460 Papaver somniferum HOM05D002846 ORTHO05D002692 1.4e-09 67.4 202 34.2
Manes.12G075700 Manihot esculenta HOM05D002846 ORTHO05D002692 1.8e-09 67.0 114 38.6
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 1.8e-09 67.0 171 34.5
Cc05_g13390 Coffea canephora HOM05D002846 ORTHO05D002692 2.3e-09 66.6 184 35.9
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.3e-09 66.6 177 39.0
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 2.3e-09 66.6 176 34.1
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 3.1e-09 66.2 175 33.7
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 3.1e-09 66.2 180 34.4
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 4.0e-09 65.9 177 39.0
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 4.0e-09 65.9 182 37.4
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 6.8e-09 65.1 173 33.5
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 6.8e-09 65.1 175 32.6
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 8.9e-09 64.7 178 32.6
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 8.9e-09 64.7 179 32.4
Duzib268G1153 Durio zibethinus HOM05D002846 ORTHO05D002692 2.0e-08 63.5 175 33.1
PGR083G2810 Punica granatum HOM05D002846 ORTHO05D002692 2.0e-08 63.5 177 29.9
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 2.6e-08 63.2 171 32.7
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.6e-08 63.2 176 36.9
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 2.6e-08 63.2 175 33.7
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 3.4e-08 62.8 178 32.6
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 3.4e-08 62.8 177 33.3
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 7.5e-08 61.6 176 31.8
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 9.8e-08 61.2 175 34.3
Nn1g03606 Nelumbo nucifera HOM05D002846 ORTHO05D002692 1.3e-07 60.8 140 35.7
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 1.7e-07 60.5 202 34.2
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.7e-07 60.5 171 32.2
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.7e-07 60.5 171 32.2
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.7e-07 60.5 179 30.2
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 2.2e-07 60.1 173 30.1
Hund02116 Selenicereus undatus HOM05D019198 ORTHO05D002692 2.9e-07 59.7 181 27.1
Sc12g0002340 Simmondsia chinensis HOM05D002846 ORTHO05D002692 2.9e-07 59.7 181 31.5
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 3.7e-07 59.3 118 39.0
PSO541G2462 Papaver somniferum HOM05D002846 ORTHO05D002692 3.7e-07 59.3 205 32.2
MBI18_g03004_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 4.9e-07 58.9 160 35.0
Gohir.A01G076300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 8.3e-07 58.2 181 28.7
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 8.3e-07 58.2 171 32.2
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.4e-06 57.4 175 29.7
Actinidia09707 Actinidia chinensis HOM05D002846 ORTHO05D002692 1.9e-06 57.0 140 35.0
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 1.9e-06 57.0 179 30.7
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 1.9e-06 57.0 182 30.8
CSS0028377 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 2.4e-06 56.6 189 34.4
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 2.4e-06 56.6 170 27.6
Gohir.D01G063800 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.4e-06 56.6 178 29.8
CiPaw.03G161600 Carya illinoinensis HOM05D002846 ORTHO05D002692 3.2e-06 56.2 151 31.8
Nitab4.5_0002229g0220 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.2e-06 56.2 154 34.4
ClCG02G008550 Citrullus lanatus HOM05D002846 ORTHO05D002692 4.1e-06 55.8 179 30.7
BcaC05g28139 Brassica carinata HOM05D002846 ORTHO05D002692 5.4e-06 55.5 180 33.3
AUR62025052 Chenopodium quinoa HOM05D002846 ORTHO05D002692 5.4e-06 55.5 113 34.5
Duzib213G0532 Durio zibethinus HOM05D002846 ORTHO05D002692 5.4e-06 55.5 178 30.9
Potri.002G230300 Populus trichocarpa HOM05D002846 ORTHO05D002692 5.4e-06 55.5 112 34.8
Sed0000680 Sechium edule HOM05D002846 ORTHO05D002692 7.0e-06 55.1 176 30.7
AT3G21710 Arabidopsis thaliana HOM05D002846 ORTHO05D002692 9.2e-06 54.7 123 35.8
Gorai.002G084300 Gossypium raimondii HOM05D002846 ORTHO05D002692 9.2e-06 54.7 178 29.2


User provided reference genes

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