Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01177 Erythranthe guttata HOM05D005986 ORTHO05D007467 5.2e-36 153.7 69 100.0
Migut.K01148 Erythranthe guttata HOM05D005986 ORTHO05D007467 5.8e-19 97.1 45 97.8
MSTRG.8073 Avicennia marina HOM05D005986 ORTHO05D007467 3.0e-15 84.7 45 77.8
Nn4g22038 Nelumbo nucifera HOM05D005986 ORTHO05D007467 6.6e-15 83.6 45 75.6
GSVIVG01001142001 Vitis vinifera HOM05D005986 ORTHO05D007467 8.7e-15 83.2 45 73.3
CSS0012960 Camellia sinensis var. sinensis HOM05D005986 ORTHO05D007467 1.5e-14 82.4 45 68.9
CiPaw.05G096500 Carya illinoinensis HOM05D005986 ORTHO05D007467 1.5e-14 82.4 45 71.1
PSO017G0169 Papaver somniferum HOM05D005986 ORTHO05D007467 1.5e-14 82.4 47 74.5
PSO478G1012 Papaver somniferum HOM05D005986 ORTHO05D007467 1.5e-14 82.4 47 74.5
HanXRQChr17g0540591 Helianthus annuus HOM05D005986 ORTHO05D007467 1.9e-14 82.0 45 71.1
TAR371G0853 Trochodendron aralioides HOM05D005986 ORTHO05D007467 1.9e-14 82.0 45 77.8
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 2.5e-14 81.6 45 73.3
TWI36G0919 Tripterygium wilfordii HOM05D005986 ORTHO05D007467 2.5e-14 81.6 45 68.9
ATR0582G342 Amborella trichopoda HOM05D005986 ORTHO05D007467 3.3e-14 81.3 44 72.7
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 3.3e-14 81.3 45 73.3
Thecc.01G233000 Theobroma cacao HOM05D005986 ORTHO05D007467 3.3e-14 81.3 45 68.9
RcHm_v2.0_Chr4g0428161 Rosa chinensis HOM05D005986 ORTHO05D007467 4.3e-14 80.9 45 73.3
Potri.001G072400 Populus trichocarpa HOM05D005986 ORTHO05D007467 5.6e-14 80.5 45 71.1
Dinv07612 Davidia involucrata HOM05D005986 ORTHO05D007467 7.3e-14 80.1 45 68.9
Duzib147G0525 Durio zibethinus HOM05D005986 ORTHO05D007467 7.3e-14 80.1 45 66.7
FvH4_4g21940 Fragaria vesca HOM05D005986 ORTHO05D007467 7.3e-14 80.1 45 71.1
FAN07G2431 Fragaria x ananassa HOM05D005986 ORTHO05D007467 7.3e-14 80.1 45 71.1
FAN12G1445 Fragaria x ananassa HOM05D005986 ORTHO05D007467 7.3e-14 80.1 45 71.1
THA.LOC104807194 Tarenaya hassleriana HOM05D005986 ORTHO05D007467 7.3e-14 80.1 45 68.9
ECA246G5024 Erigeron canadensis HOM05D005986 ORTHO05D007467 9.6e-14 79.7 46 73.9
HPP92_001278 Vanilla planifolia HOM05D005986 ORTHO05D007467 9.6e-14 79.7 45 71.1
Ciclev10028467m.g Citrus clementina HOM05D005986 ORTHO05D007467 1.3e-13 79.3 45 68.9
Lsat_1_v5_gn_3_33381 Lactuca sativa HOM05D005986 ORTHO05D007467 1.3e-13 79.3 46 69.6
MD13G1135500 Malus domestica HOM05D005986 ORTHO05D007467 1.6e-13 79.0 45 66.7
QL03p046965 Quercus lobata HOM05D005986 ORTHO05D007467 1.6e-13 79.0 45 66.7
Cc11_g14820 Coffea canephora HOM05D005986 ORTHO05D007467 2.8e-13 78.2 45 73.3
MD16G1131100 Malus domestica HOM05D005986 ORTHO05D007467 2.8e-13 78.2 45 64.4
Gohir.A12G086500 Gossypium hirsutum HOM05D005986 ORTHO05D007467 3.6e-13 77.8 45 64.4
Gorai.008G095500 Gossypium raimondii HOM05D005986 ORTHO05D007467 3.6e-13 77.8 45 64.4
Actinidia33985 Actinidia chinensis HOM05D005986 ORTHO05D007467 6.2e-13 77.0 45 66.7
Aa31LG3G14160 Aethionema arabicum HOM05D005986 ORTHO05D007467 6.2e-13 77.0 45 71.1
Hma1.2p1_1356F.1_g277880 Hydrangea macrophylla HOM05D005986 ORTHO05D007467 6.2e-13 77.0 45 68.9
Prupe.1G209800 Prunus persica HOM05D005986 ORTHO05D007467 6.2e-13 77.0 45 66.7
AL8G19850 Arabidopsis lyrata HOM05D005986 ORTHO05D007467 8.1e-13 76.6 45 71.1
Carub.0008s0731 Capsella rubella HOM05D005986 ORTHO05D007467 8.1e-13 76.6 45 71.1
Cfa012833 Carpinus fangiana HOM05D005986 ORTHO05D007467 8.1e-13 76.6 45 64.4
Haze_12546 Corylus avellana HOM05D005986 ORTHO05D007467 8.1e-13 76.6 45 64.4
Gohir.D12G085100 Gossypium hirsutum HOM05D005986 ORTHO05D007467 8.1e-13 76.6 45 62.2
Gorai.006G003600 Gossypium raimondii HOM05D005986 ORTHO05D007467 8.1e-13 76.6 45 64.4
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 8.1e-13 76.6 45 66.7
Thhalv10004270m.g Eutrema salsugineum HOM05D005986 ORTHO05D007467 1.1e-12 76.3 45 73.3
Gohir.D09G002900 Gossypium hirsutum HOM05D005986 ORTHO05D007467 1.1e-12 76.3 45 62.2
unitig_747.g21105 Utricularia gibba HOM05D005986 ORTHO05D007467 1.1e-12 76.3 45 71.1
TAR627G0548 Trochodendron aralioides HOM05D005986 ORTHO05D007467 1.4e-12 75.9 44 68.2
Eucgr.B03577 Eucalyptus grandis HOM05D005986 ORTHO05D007467 1.8e-12 75.5 45 64.4
Os04g0405600 Oryza sativa ssp. japonica HOM05D005986 ORTHO05D007467 1.8e-12 75.5 45 62.2
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 2.4e-12 75.1 45 60.0
Nitab4.5_0002199g0020 Nicotiana tabacum HOM05D005986 ORTHO05D007467 2.4e-12 75.1 45 73.3
AT5G47860 Arabidopsis thaliana HOM05D005986 ORTHO05D007467 3.1e-12 74.7 45 68.9
Gohir.A09G003100 Gossypium hirsutum HOM05D005986 ORTHO05D007467 3.1e-12 74.7 45 62.2
Phvul.003G273800 Phaseolus vulgaris HOM05D005986 ORTHO05D007467 4.0e-12 74.3 45 62.2
Sp2g18360 Schrenkiella parvula HOM05D005986 ORTHO05D007467 4.0e-12 74.3 45 73.3
Zm00001eb084350 Zea mays HOM05D005986 ORTHO05D007467 4.0e-12 74.3 45 60.0
Lalb_Chr16g0391881 Lupinus albus HOM05D005986 ORTHO05D007467 5.3e-12 73.9 45 62.2
Nitab4.5_0000069g0470 Nicotiana tabacum HOM05D005986 ORTHO05D007467 5.3e-12 73.9 45 71.1
VMungo0251G3786 Vigna mungo HOM05D005986 ORTHO05D007467 5.3e-12 73.9 45 62.2
Glyma.08G265400 Glycine max HOM05D005986 ORTHO05D007467 6.9e-12 73.6 45 62.2
Cpa.g.sc102.15 Carica papaya HOM05D005986 ORTHO05D007467 9.0e-12 73.2 45 62.2
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 1.2e-11 72.8 45 62.2
Sabra03G0114800 Salix brachista HOM05D005986 ORTHO05D007467 1.2e-11 72.8 45 62.2
C07p38760 Brassica napus HOM05D005986 ORTHO05D007467 1.5e-11 72.4 45 64.4
Peaxi162Scf00097g01214 Petunia axillaris HOM05D005986 ORTHO05D007467 1.5e-11 72.4 45 68.9
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 1.5e-11 72.4 45 62.2
BolC7t44395H Brassica oleracea HOM05D005986 ORTHO05D007467 2.0e-11 72.0 45 66.7
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 2.0e-11 72.0 45 64.4
A06p39510 Brassica napus HOM05D005986 ORTHO05D007467 2.6e-11 71.6 45 66.7
BraA06t26866Z Brassica rapa HOM05D005986 ORTHO05D007467 2.6e-11 71.6 45 66.7
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 2.6e-11 71.6 45 64.4
MELO3C026759.2 Cucumis melo HOM05D005986 ORTHO05D007467 2.6e-11 71.6 45 60.0
CsaV3_3G043440 Cucumis sativus L. HOM05D005986 ORTHO05D007467 2.6e-11 71.6 45 60.0
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 2.6e-11 71.6 45 57.8
SGA_v2.0_scaffold258G45750 Striga asiatica HOM05D005986 ORTHO05D007467 2.6e-11 71.6 45 71.1
CAN.G282.72 Capsicum annuum HOM05D005986 ORTHO05D007467 3.4e-11 71.2 45 68.9
SEGI_07632 Sequoiadendron giganteum HOM05D005986 ORTHO05D007467 3.4e-11 71.2 45 60.0
Solyc01g008070.3 Solanum lycopersicum HOM05D005986 ORTHO05D007467 3.4e-11 71.2 45 71.1
Sopen01g003630 Solanum pennellii HOM05D005986 ORTHO05D007467 3.4e-11 71.2 45 71.1
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 4.5e-11 70.9 47 55.3
Sc11g0000020 Simmondsia chinensis HOM05D005986 ORTHO05D007467 4.5e-11 70.9 44 63.6
PGSC0003DMG401016404 Solanum tuberosum HOM05D005986 ORTHO05D007467 4.5e-11 70.9 45 68.9
CARHR184430 Cardamine hirsuta HOM05D005986 ORTHO05D007467 7.6e-11 70.1 45 66.7
COL.COLO4_06172 Corchorus olitorius HOM05D005986 ORTHO05D007467 7.6e-11 70.1 45 57.8
MBI07_g41256_MAGBIO Magnolia biondii HOM05D005986 ORTHO05D007467 7.6e-11 70.1 47 63.8
EL10Ac4g08348 Beta vulgaris HOM05D005986 ORTHO05D007467 9.9e-11 69.7 45 62.2
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 9.9e-11 69.7 45 55.6
arahy.Tifrunner.gnm1.ann1.7WS5BD Arachis hypogaea HOM05D005986 ORTHO05D007467 2.2e-10 68.6 45 55.6
arahy.Tifrunner.gnm1.ann1.946FET Arachis hypogaea HOM05D005986 ORTHO05D007467 2.2e-10 68.6 45 55.6
Oeu056144.2 Olea europaea HOM05D005986 ORTHO05D007467 2.2e-10 68.6 45 68.9
Sed0002782 Sechium edule HOM05D005986 ORTHO05D007467 3.8e-10 67.8 45 60.0
TPR.G6140 Trifolium pratense HOM05D005986 ORTHO05D007467 6.4e-10 67.0 45 51.1
vmacro15979 Vaccinium macrocarpon HOM05D005986 ORTHO05D007467 6.4e-10 67.0 44 56.8
Ah.06g185370 Amaranthus hybridus HOM05D005986 ORTHO05D007467 2.4e-09 65.1 38 65.8
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 4.2e-09 64.3 46 52.2
Pp3c24_14070 Physcomitrium patens HOM05D005986 ORTHO05D007467 8.7e-07 56.6 45 46.7


User provided reference genes

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