Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.0e-106 390.2 211 100.0
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 3.1e-79 298.9 211 77.3
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 6.8e-79 297.7 211 78.2
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.7e-69 266.5 195 73.8
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.7e-69 266.5 215 70.7
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.9e-69 265.8 213 70.9
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 6.4e-69 264.6 182 76.9
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 4.2e-68 261.9 202 71.3
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.1e-67 259.6 208 70.2
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 2.7e-67 259.2 205 69.8
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.7e-67 259.2 202 69.8
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 2.7e-67 259.2 202 70.8
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 6.0e-67 258.1 204 68.6
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 3.9e-66 255.4 211 67.8
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 8.7e-66 254.2 197 70.1
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 3.3e-65 252.3 210 67.1
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.3e-65 251.9 191 68.6
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 7.3e-65 251.1 207 66.7
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 7.3e-65 251.1 193 68.9
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 9.6e-65 250.8 184 71.2
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 1.6e-64 250.0 205 69.3
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.6e-64 248.8 207 66.2
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 3.6e-64 248.8 191 68.1
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 4.8e-64 248.4 228 63.2
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 6.2e-64 248.1 184 72.3
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 8.1e-64 247.7 182 72.5
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 8.1e-64 247.7 206 67.5
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.1e-63 247.3 192 68.8
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.1e-63 247.3 198 67.7
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.8e-63 246.5 208 64.4
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 3.1e-63 245.7 208 64.9
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 4.0e-63 245.4 204 68.6
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 6.9e-63 244.6 213 66.2
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.2e-62 243.8 191 68.1
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.2e-62 243.8 184 71.7
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.5e-62 243.4 207 63.8
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.5e-62 243.4 203 64.5
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 2.0e-62 243.0 208 65.9
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 4.5e-62 241.9 209 64.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 5.8e-62 241.5 187 68.4
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 5.8e-62 241.5 182 68.7
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 7.6e-62 241.1 192 69.3
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.3e-61 240.4 206 65.5
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.3e-61 240.4 192 66.7
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.7e-61 240.0 204 65.2
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 2.2e-61 239.6 208 65.4
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.2e-61 239.6 208 65.4
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 3.8e-61 238.8 209 64.1
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 4.9e-61 238.4 201 63.2
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.4e-61 237.7 196 64.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 4.2e-60 235.3 205 63.4
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 4.2e-60 235.3 203 65.5
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 5.4e-60 235.0 185 69.2
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 5.4e-60 235.0 189 67.2
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 7.1e-60 234.6 210 64.3
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 9.3e-60 234.2 197 65.0
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 9.3e-60 234.2 184 67.4
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 9.3e-60 234.2 191 66.5
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.6e-59 233.4 207 62.3
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 3.5e-59 232.3 182 65.9
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 6.0e-59 231.5 204 62.3
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.0e-58 230.7 203 62.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.3e-58 230.3 206 62.6
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.8e-58 229.9 203 63.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 3.0e-58 229.2 209 62.2
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 3.9e-58 228.8 189 67.2
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 3.9e-58 228.8 193 66.8
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 3.9e-58 228.8 205 62.0
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 6.7e-58 228.0 200 66.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 6.7e-58 228.0 181 66.9
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.3e-57 225.3 196 64.3
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.1e-55 220.7 188 64.9
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.1e-55 220.7 188 64.9
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.1e-55 220.7 188 64.9
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.4e-55 220.3 175 66.9
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.4e-55 220.3 175 66.9
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.8e-55 219.9 224 55.8
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 2.4e-55 219.5 188 63.8
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.3e-55 218.4 181 65.2
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 5.3e-55 218.4 189 64.6
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 3.4e-54 215.7 209 58.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.7e-53 213.4 188 64.4
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 3.8e-53 212.2 214 58.9
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 4.9e-53 211.8 207 59.4
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 8.4e-53 211.1 208 58.7
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 2.5e-52 209.5 169 66.3
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.5e-52 209.5 211 59.7
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 3.2e-52 209.1 206 59.7
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.2e-52 208.8 189 61.4
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.5e-52 208.4 192 61.5
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 5.5e-52 208.4 192 61.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.2e-51 207.2 207 58.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.0e-50 204.1 156 69.9
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.3e-50 203.0 209 58.4
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 2.3e-50 203.0 171 61.4
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.5e-49 200.3 177 62.1
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.3e-49 199.1 191 58.1
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-48 197.2 151 68.9
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-48 197.2 161 65.2
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.8e-47 193.4 143 73.4
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.1e-47 192.2 143 73.4
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 5.3e-47 191.8 256 49.2
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.0e-46 189.9 151 71.5
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 2.0e-46 189.9 117 82.9
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.7e-45 186.8 208 51.4
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.8e-42 176.8 128 72.7
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.5e-41 172.9 203 55.2
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.3e-40 170.6 189 53.4
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.2e-40 169.9 136 69.9
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.8e-40 169.5 176 55.1
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 6.9e-39 164.9 181 53.0
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 9.0e-39 164.5 141 61.0
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 1.2e-38 164.1 137 67.2
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.9e-36 156.8 112 67.0
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 2.2e-32 143.3 122 65.6
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 5.5e-28 128.6 113 62.8
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 9.4e-28 127.9 80 82.5
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.0e-26 122.9 80 78.8
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.9e-26 122.5 107 56.1
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 8.8e-26 121.3 121 52.1
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 8.8e-26 121.3 196 38.3
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 7.4e-25 118.2 206 34.0
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.4e-25 118.2 80 76.2
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.7e-24 115.9 99 63.6
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 4.5e-22 109.0 113 57.5
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.2e-21 106.7 151 46.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 6.5e-21 105.1 149 45.0
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.5e-20 103.2 196 33.7
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 4.2e-20 102.4 76 69.7
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 8.0e-19 98.2 81 59.3
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.8e-16 89.7 78 60.3
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 8.2e-16 88.2 140 38.6
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-15 87.8 68 66.2
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 4.1e-15 85.9 117 36.8
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 3.8e-13 79.3 73 58.9
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.4e-07 60.8 81 44.4
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 2.7e-06 56.6 63 54.0


User provided reference genes

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