Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.5e-49 198.4 93 100.0
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.8e-39 163.7 97 84.5
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.8e-23 110.5 96 64.6
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.3e-17 91.7 99 49.5
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.6e-16 89.4 98 50.0
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.2e-16 87.4 95 52.6
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-15 86.7 97 48.5
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.8e-15 85.9 99 46.5
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 3.1e-15 85.1 99 48.5
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.2e-15 84.3 97 49.5
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 5.2e-15 84.3 93 47.3
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 5.2e-15 84.3 93 47.3
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 5.2e-15 84.3 93 47.3
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 2.0e-14 82.4 97 47.4
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 2.6e-14 82.0 105 43.8
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 2.6e-14 82.0 97 47.4
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 7.6e-14 80.5 99 45.5
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 1.7e-13 79.3 99 46.5
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.9e-13 78.6 97 47.4
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 3.8e-13 78.2 87 49.4
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.4e-12 76.3 90 53.3
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.4e-12 76.3 92 44.6
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.9e-12 75.9 92 45.7
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 2.4e-12 75.5 97 44.3
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 4.2e-12 74.7 99 43.4
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 4.2e-12 74.7 95 45.3
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 5.4e-12 74.3 98 49.0
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 5.4e-12 74.3 97 43.3
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 5.4e-12 74.3 97 45.4
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 7.1e-12 73.9 98 42.9
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.6e-11 72.8 95 46.3
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.6e-11 72.8 98 43.9
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.5e-11 71.6 92 47.8
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 3.5e-11 71.6 98 40.8
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 6.0e-11 70.9 97 42.3
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 6.0e-11 70.9 96 40.6
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 6.0e-11 70.9 96 38.5
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 7.8e-11 70.5 87 47.1
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.0e-10 70.1 93 43.0
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 1.7e-10 69.3 98 39.8
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.7e-10 69.3 97 43.3
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.7e-10 69.3 95 38.9
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 5.1e-10 67.8 93 41.9
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 1.1e-09 66.6 91 44.0
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.1e-09 66.6 97 42.3
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.1e-09 66.6 94 39.4
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.5e-09 66.2 93 38.7
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 1.5e-09 66.2 97 42.3
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.5e-09 65.5 96 43.8
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 2.5e-09 65.5 97 41.2
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.5e-09 65.5 100 40.0
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 5.6e-09 64.3 95 37.9
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 9.6e-09 63.5 98 40.8
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 1.6e-08 62.8 97 43.3
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 2.1e-08 62.4 95 36.8
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 2.8e-08 62.0 97 42.3
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 3.6e-08 61.6 93 36.6
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.2e-08 60.8 97 42.3
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 6.2e-08 60.8 97 43.3
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 8.1e-08 60.5 88 35.2
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 1.1e-07 60.1 96 34.4
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.4e-07 59.7 97 42.3
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.8e-07 59.3 99 41.4
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.4e-07 58.9 94 39.4
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.4e-07 58.9 95 33.7
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 4.0e-07 58.2 97 34.0
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 4.0e-07 58.2 99 41.4
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 4.0e-07 58.2 99 41.4
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 6.9e-07 57.4 97 37.1
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 9.0e-07 57.0 105 37.1
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 9.0e-07 57.0 99 38.4
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 9.0e-07 57.0 95 38.9
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 9.0e-07 57.0 98 38.8
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 9.0e-07 57.0 99 38.4
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 1.2e-06 56.6 104 34.6
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 1.2e-06 56.6 104 34.6
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.2e-06 56.6 101 39.6
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.2e-06 56.6 99 38.4
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.2e-06 56.6 98 37.8
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 1.2e-06 56.6 99 37.4
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.2e-06 56.6 96 34.4
Migut.H01018 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.5e-06 56.2 90 46.7
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 2.0e-06 55.8 99 38.4
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 4.4e-06 54.7 104 33.7
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 5.8e-06 54.3 104 33.7
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.8e-06 54.3 97 37.1
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 5.8e-06 54.3 94 36.2
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 7.6e-06 53.9 104 33.7
ECA246G1803 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.6e-06 53.9 96 33.3
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 9.9e-06 53.5 104 32.7


User provided reference genes

Program Settings