Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 2123.6 1057 100.0
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1749.6 1058 80.5
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1686.8 1060 77.7
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1563.5 1107 70.3
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1445.6 1052 66.7
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1429.5 1058 64.8
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1406.3 1060 64.2
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1386.3 1065 64.6
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1382.9 1063 63.6
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1377.1 1057 63.6
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1375.9 1054 63.6
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1374.0 1159 59.4
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1374.0 1054 63.5
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1368.2 1050 63.5
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1363.6 1051 63.1
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1346.6 1044 63.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1338.6 1049 61.2
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1334.7 1061 62.5
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1048 62.3
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1050 62.0
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1326.6 1054 62.3
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1322.4 1064 61.7
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1322.0 1051 61.2
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1321.2 1079 62.4
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1319.7 1055 61.6
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1317.0 1053 61.5
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1315.1 1066 60.5
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1310.0 1051 61.1
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1307.7 1038 61.7
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1300.4 1052 62.5
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1296.6 1055 61.5
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1296.2 1049 60.0
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1294.6 1088 59.8
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1289.6 1133 57.2
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1288.1 1055 60.9
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1287.7 1059 61.9
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1287.3 1052 62.2
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1286.9 1049 60.3
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1276.9 1079 59.1
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1276.9 1054 59.9
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1274.6 1013 62.4
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1274.2 1051 60.1
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1047 60.7
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1271.9 1147 57.0
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1265.4 1053 59.5
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1265.4 1054 59.4
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1263.8 1054 58.8
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1262.3 1055 59.1
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1262.3 1064 59.3
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1049 59.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1257.3 1059 58.8
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1254.6 1052 58.8
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1250.0 1052 58.0
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1247.3 1052 58.4
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1246.1 1045 58.7
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1245.7 1062 57.9
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1242.6 1080 58.2
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1241.5 1057 59.3
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1240.7 1063 57.9
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 1051 57.8
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1237.2 1046 58.3
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1235.3 1045 58.2
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1235.3 1049 58.1
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1233.0 1051 57.4
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1232.2 1060 57.1
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1231.5 1047 58.5
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1229.2 1057 57.8
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1228.4 1047 58.4
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1226.8 1052 57.7
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1224.5 1056 57.2
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1224.2 1046 57.6
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1219.9 1047 58.2
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1218.8 1047 58.2
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1217.6 1055 57.1
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1216.4 1084 57.5
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1210.3 1049 57.5
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1209.9 1033 58.6
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1208.4 1048 56.7
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1207.6 1179 54.7
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1206.8 1040 58.5
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1197.6 1067 56.3
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1182.5 1103 55.8
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1174.1 1053 55.7
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1172.9 1051 55.7
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1168.3 1053 57.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1133.2 1045 54.9
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 0.0e+00 1131.3 1066 56.3
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1124.0 1045 53.6
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1115.5 1027 54.8
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 0.0e+00 1095.1 1053 54.6
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1085.5 855 62.0
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 5.1e-311 1071.2 1023 52.5
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 5.3e-297 1024.6 867 58.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.6e-285 986.5 1022 49.4
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 5.0e-271 938.3 672 71.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 6.6e-255 884.8 899 52.3
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.9e-246 856.7 1059 43.5
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 4.7e-245 852.0 765 57.3
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 2.4e-241 839.7 679 60.4
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 1.2e-240 837.4 707 59.4
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.1e-238 830.9 878 50.3
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.6e-198 695.7 700 49.6
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.4e-193 681.0 507 64.3
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 6.0e-192 675.6 835 43.2
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-186 657.9 723 49.5
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 7.2e-185 652.1 1013 38.6
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 9.4e-185 651.7 549 60.1
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.6e-184 649.4 823 44.6
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 4.5e-179 632.9 1048 38.3
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.7e-170 604.4 861 39.6
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 9.1e-164 582.0 516 55.6
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 1.4e-156 558.1 598 49.8
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.2e-147 528.5 487 54.8
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.6e-144 518.1 506 50.4
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.5e-139 500.4 380 63.9
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.2e-133 481.1 438 55.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.9e-125 454.1 357 62.7
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.0e-122 444.1 351 63.5
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 9.6e-113 412.5 459 47.1
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 8.1e-112 409.5 858 31.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.3e-106 392.1 344 55.8
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 7.3e-97 359.8 1153 27.8
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.3e-80 305.8 211 67.8
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.8e-80 304.7 257 58.4
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 1.3e-69 269.2 221 58.8
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 4.8e-64 250.8 397 40.3
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.4e-63 249.2 207 56.0
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 5.9e-62 243.8 177 67.8
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 3.8e-61 241.1 292 46.9
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.0e-61 240.7 988 25.0
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 8.5e-61 240.0 243 52.7
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 7.9e-59 233.4 1168 24.7
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 4.8e-56 224.2 279 47.0
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 9.1e-55 219.9 506 31.6
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.7e-48 198.0 326 39.0
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.6e-41 175.3 152 49.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-39 169.1 126 66.7
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.8e-37 161.4 222 43.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.6e-35 156.0 187 45.5
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 4.4e-33 147.9 327 30.9
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 4.5e-30 137.9 99 65.7
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 3.6e-27 128.3 86 72.1
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.0e-26 124.8 113 58.4
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 4.1e-23 114.8 99 58.6
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.7e-22 112.1 104 54.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 5.9e-22 110.9 71 70.4
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 3.9e-21 108.2 154 42.9
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 4.3e-20 104.8 157 42.0
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.2e-19 103.2 85 57.6
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 7.5e-17 94.0 70 64.3
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-14 84.7 104 43.3
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 4.6e-14 84.7 154 33.1
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 4.3e-12 78.2 70 52.9
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 5.8e-09 67.8 81 43.2
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.2e-08 65.9 121 33.1
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 5.4e-07 61.2 45 62.2


User provided reference genes

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