Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 4.1e-20 100.5 54 100.0
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 4.4e-14 80.5 54 75.9
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 4.4e-14 80.5 54 75.9
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 7.5e-14 79.7 54 72.2
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 7.5e-14 79.7 54 72.2
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 7.5e-14 79.7 54 72.2
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 75.9
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 75.9
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 1.7e-13 78.6 54 75.9
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.7e-13 78.6 54 75.9
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 2.8e-13 77.8 54 68.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 2.8e-13 77.8 54 72.2
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.8e-12 75.1 54 68.5
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.8e-12 75.1 54 70.4
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 3.2e-12 74.3 54 70.4
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 5.4e-12 73.6 52 69.2
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 5.4e-12 73.6 53 69.8
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 7.0e-12 73.2 54 68.5
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 1.2e-11 72.4 54 68.5
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 2.0e-11 71.6 54 72.2
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 2.7e-11 71.2 49 71.4
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.7e-11 71.2 49 71.4
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.7e-11 71.2 49 71.4
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 4.5e-11 70.5 54 64.8
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 5.9e-11 70.1 51 68.6
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 7.8e-11 69.7 54 64.8
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.7e-10 68.6 48 70.8
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 1.7e-10 68.6 54 64.8
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 3.9e-10 67.4 54 63.0
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 63.0
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.5e-09 65.5 54 63.0
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.5e-09 65.5 50 64.0
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.9e-09 65.1 48 66.7
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.9e-09 65.1 48 66.7
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.3e-09 64.3 52 65.4
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 3.3e-09 64.3 54 61.1
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 5.6e-09 63.5 54 59.3
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 5.6e-09 63.5 49 61.2
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 7.3e-09 63.2 54 57.4
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 9.5e-09 62.8 52 63.5
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 9.5e-09 62.8 54 63.0
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 1.2e-08 62.4 48 66.7
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 1.6e-08 62.0 52 63.5
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 1.6e-08 62.0 52 63.5
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 1.6e-08 62.0 52 63.5
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 1.6e-08 62.0 52 63.5
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 1.6e-08 62.0 52 63.5
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 2.1e-08 61.6 52 63.5
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 2.8e-08 61.2 52 63.5
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 2.8e-08 61.2 52 63.5
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 2.8e-08 61.2 52 61.5
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 2.8e-08 61.2 54 55.6
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 2.8e-08 61.2 54 55.6
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.8e-08 61.2 52 61.5
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 3.6e-08 60.8 52 61.5
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 3.6e-08 60.8 52 61.5
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 3.6e-08 60.8 52 61.5
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 3.6e-08 60.8 52 61.5
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 4.7e-08 60.5 52 61.5
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 4.7e-08 60.5 52 63.5
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 4.7e-08 60.5 52 61.5
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 4.7e-08 60.5 52 63.5
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 8.0e-08 59.7 52 61.5
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 8.0e-08 59.7 52 61.5
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.0e-07 59.3 49 59.2
FAN05G0138 Fragaria x ananassa HOM05D000576 ORTHO05D010163 2.3e-07 58.2 45 66.7
FAN23G1982 Fragaria x ananassa HOM05D000576 ORTHO05D010163 2.3e-07 58.2 45 66.7
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 2.3e-07 58.2 48 58.3
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 6.8e-07 56.6 44 65.9
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 6.8e-07 56.6 48 58.3
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 8.9e-07 56.2 49 55.1
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 8.9e-07 56.2 42 61.9
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.2e-06 55.8 52 55.8


User provided reference genes

Program Settings