Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00903 Erythranthe guttata HOM05D000001 ORTHO05D000501 2.5e-81 305.4 158 100.0
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.4e-36 156.8 135 53.3
MSTRG.25466 Avicennia marina HOM05D000001 ORTHO05D000501 1.2e-24 117.1 133 45.1
SGA_v2.0_scaffold205G41769 Striga asiatica HOM05D000001 ORTHO05D000501 6.0e-19 98.2 71 63.4
arahy.Tifrunner.gnm1.ann1.N8IDFH Arachis hypogaea HOM05D000001 ORTHO05D000501 1.5e-14 83.6 130 33.1
CSS0029351 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000501 9.8e-14 80.9 129 34.1
Actinidia25576 Actinidia chinensis HOM05D000001 ORTHO05D000501 6.4e-13 78.2 129 30.2
arahy.Tifrunner.gnm1.ann1.M8R2T1 Arachis hypogaea HOM05D000001 ORTHO05D000501 6.4e-13 78.2 130 32.3
PGSC0003DMG400019997 Solanum tuberosum HOM05D000001 ORTHO05D011474 6.4e-13 78.2 127 33.9
Rhsim12G0135800 Rhododendron simsii HOM05D000001 ORTHO05D000501 8.3e-13 77.8 127 29.9
Dinv34984 Davidia involucrata HOM05D000001 ORTHO05D000501 1.1e-12 77.4 109 30.3
Dinv34986 Davidia involucrata HOM05D000001 ORTHO05D000501 1.1e-12 77.4 109 30.3
arahy.Tifrunner.gnm1.ann1.YYPI83 Arachis hypogaea HOM05D000001 ORTHO05D000501 5.4e-12 75.1 118 33.9
PGSC0003DMG400031503 Solanum tuberosum HOM05D000001 ORTHO05D000501 5.4e-12 75.1 130 34.6
Carub.0005s0189 Capsella rubella HOM05D000001 ORTHO05D000501 7.1e-12 74.7 128 30.5
Ah.03g135000 Amaranthus hybridus HOM05D000001 ORTHO05D000501 1.6e-11 73.6 112 32.1
arahy.Tifrunner.gnm1.ann1.E6ZCRX Arachis hypogaea HOM05D000001 ORTHO05D000501 2.1e-11 73.2 119 37.0
BcaC06g31207 Brassica carinata HOM05D000001 ORTHO05D000501 2.7e-11 72.8 135 29.6
Sp2g14030 Schrenkiella parvula HOM05D000001 ORTHO05D000501 3.5e-11 72.4 135 30.4
BcaC06g34026 Brassica carinata HOM05D000001 ORTHO05D000501 7.8e-11 71.2 135 30.4
A06p43340 Brassica napus HOM05D000001 ORTHO05D000501 7.8e-11 71.2 135 30.4
C07p33610 Brassica napus HOM05D000001 ORTHO05D000501 7.8e-11 71.2 135 30.4
BraA06t27220Z Brassica rapa HOM05D000001 ORTHO05D000501 7.8e-11 71.2 135 30.4
AUR62005799 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.3e-10 70.5 121 30.6
BolC7t43871H Brassica oleracea HOM05D000001 ORTHO05D000501 2.3e-10 69.7 135 30.4
AUR62005798 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.3e-10 69.7 123 30.1
CANSAT64G0303 Cannabis sativa HOM05D000001 ORTHO05D000501 3.0e-10 69.3 130 30.0
CANSAT78G2287 Cannabis sativa HOM05D000001 ORTHO05D000501 3.0e-10 69.3 134 29.9
arahy.Tifrunner.gnm1.ann1.VQ1W7S Arachis hypogaea HOM05D000001 ORTHO05D000501 6.6e-10 68.2 126 34.1
Sc04g0008070 Simmondsia chinensis HOM05D000001 ORTHO05D000501 8.6e-10 67.8 124 30.6
CsaV3_3G036400 Cucumis sativus L. HOM05D000001 ORTHO05D000039 1.1e-09 67.4 122 32.0
arahy.Tifrunner.gnm1.ann1.X5LBI6 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.9e-09 66.6 104 30.8
arahy.Tifrunner.gnm1.ann1.7W4W3Z Arachis hypogaea HOM05D000001 ORTHO05D000501 2.5e-09 66.2 116 32.8
EL10Ac6g13215 Beta vulgaris HOM05D000001 ORTHO05D000501 2.5e-09 66.2 131 29.0
Medtr0129s0080 Medicago truncatula HOM05D000001 ORTHO05D000501 2.5e-09 66.2 136 29.4
AUR62032789 Chenopodium quinoa HOM05D000001 ORTHO05D000501 3.3e-09 65.9 130 28.5
Peaxi162Scf00803g00534 Petunia axillaris HOM05D000001 ORTHO05D011474 3.3e-09 65.9 139 28.8
BcaC07g41588 Brassica carinata HOM05D000001 ORTHO05D000501 4.3e-09 65.5 149 29.5
SEGI_15442 Sequoiadendron giganteum HOM05D000001 ORTHO05D000501 4.3e-09 65.5 132 28.0
SEGI_35507 Sequoiadendron giganteum HOM05D000001 ORTHO05D000501 4.3e-09 65.5 132 28.0
A02p33210 Brassica napus HOM05D000001 ORTHO05D000501 5.6e-09 65.1 135 28.1
C02p51020 Brassica napus HOM05D000001 ORTHO05D000501 5.6e-09 65.1 135 28.1
BolC2t11195H Brassica oleracea HOM05D000001 ORTHO05D000501 5.6e-09 65.1 135 28.1
BraA02t08345Z Brassica rapa HOM05D000001 ORTHO05D000501 5.6e-09 65.1 135 28.1
AUR62005800 Chenopodium quinoa HOM05D000001 ORTHO05D000501 5.6e-09 65.1 120 28.3
BcaC03g17180 Brassica carinata HOM05D000001 ORTHO05D000501 7.3e-09 64.7 135 28.1
Thhalv10008594m.g Eutrema salsugineum HOM05D000001 ORTHO05D000501 7.3e-09 64.7 126 31.0
arahy.Tifrunner.gnm1.ann1.4UZ7ZE Arachis hypogaea HOM05D000001 ORTHO05D000501 1.2e-08 63.9 126 28.6
BcaB08g34378 Brassica carinata HOM05D000001 ORTHO05D000501 1.2e-08 63.9 127 29.1
A09p62350 Brassica napus HOM05D000001 ORTHO05D000501 1.2e-08 63.9 129 30.2
BraA09t41600Z Brassica rapa HOM05D000001 ORTHO05D000501 1.2e-08 63.9 129 30.2
MBI05_g29543_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 1.2e-08 63.9 121 29.8
MBI05_g34369_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 1.2e-08 63.9 121 29.8
ClCG10G015160 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.6e-08 63.5 104 30.8
CsaV3_3G041400 Cucumis sativus L. HOM05D000001 ORTHO05D000501 2.8e-08 62.8 120 28.3
Aa31LG2G7350 Aethionema arabicum HOM05D000001 ORTHO05D000501 3.6e-08 62.4 126 27.8
TWI32G1362 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 3.6e-08 62.4 113 35.4
PGSC0003DMG400026334 Solanum tuberosum HOM05D010663 ORTHO05D020963 4.7e-08 62.0 132 25.0
Carub.0001s1390 Capsella rubella HOM05D000001 ORTHO05D000501 6.2e-08 61.6 126 31.0
QL02p078664 Quercus lobata HOM05D000001 ORTHO05D000501 1.1e-07 60.8 89 31.5
AagrBONN_evm.TU.Sc2ySwM_344.5094 Anthoceros agrestis HOM05D000001 ORTHO05D000501 1.4e-07 60.5 115 33.0
CARHR014640 Cardamine hirsuta HOM05D000001 ORTHO05D000501 1.4e-07 60.5 132 28.0
Solyc07g006570.4 Solanum lycopersicum HOM05D010663 ORTHO05D011474 1.8e-07 60.1 138 26.8
AL1G26100 Arabidopsis lyrata HOM05D000001 ORTHO05D000501 4.0e-07 58.9 107 31.8
Rhsim09G0141400 Rhododendron simsii HOM05D000001 ORTHO05D000501 4.0e-07 58.9 132 23.5
arahy.Tifrunner.gnm1.ann1.WX7QTN Arachis hypogaea HOM05D000001 ORTHO05D000501 5.2e-07 58.5 125 29.6
BcaC07g41587 Brassica carinata HOM05D000001 ORTHO05D000501 5.2e-07 58.5 132 28.8
BolC8t52142H Brassica oleracea HOM05D000001 ORTHO05D000501 5.2e-07 58.5 132 28.8
RcHm_v2.0_Chr3g0457381 Rosa chinensis HOM05D000001 ORTHO05D000501 8.9e-07 57.8 118 29.7
PGSC0003DMG400027455 Solanum tuberosum HOM05D010663 ORTHO05D011474 8.9e-07 57.8 141 27.0
Peaxi162Scf00336g00045 Petunia axillaris HOM05D000001 ORTHO05D000501 1.2e-06 57.4 125 31.2
RcHm_v2.0_Chr2g0123571 Rosa chinensis HOM05D000001 ORTHO05D000501 1.2e-06 57.4 124 25.8
TWI39G0312 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 1.2e-06 57.4 125 29.6
AT1G14220 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 2.0e-06 56.6 128 27.3
A09p62330 Brassica napus HOM05D000001 ORTHO05D000501 4.4e-06 55.5 132 26.5
Nn4g25816 Nelumbo nucifera HOM05D000001 ORTHO05D000501 4.4e-06 55.5 121 28.1
AT1G14210 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 7.6e-06 54.7 107 29.9
BraA09t41598Z Brassica rapa HOM05D000001 ORTHO05D000501 7.6e-06 54.7 132 26.5
Nitab4.5_0003805g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000501 7.6e-06 54.7 127 25.2
PGSC0003DMG400027454 Solanum tuberosum HOM05D010663 ORTHO05D011474 7.6e-06 54.7 130 26.2
TWI38G1778 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 7.6e-06 54.7 128 28.1
Carub.0001s1391 Capsella rubella HOM05D000001 ORTHO05D000501 9.9e-06 54.3 121 27.3
CARHR014630 Cardamine hirsuta HOM05D000001 ORTHO05D000501 9.9e-06 54.3 129 27.9
Sed0020429 Sechium edule HOM05D000001 ORTHO05D000501 9.9e-06 54.3 89 30.3


User provided reference genes

Program Settings