Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 4.1e-129 464.9 264 100.0
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 4.4e-83 312.0 277 66.4
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 4.9e-74 282.0 272 59.6
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 3.3e-70 269.2 270 57.4
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 5.6e-70 268.5 264 63.3
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 2.3e-68 263.1 204 67.6
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 4.0e-68 262.3 206 67.0
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.2e-67 260.8 208 63.9
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 4.4e-67 258.8 198 65.7
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 4.4e-67 258.8 204 67.2
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 7.5e-67 258.1 193 67.9
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.3e-66 257.3 202 66.3
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 4.9e-66 255.4 192 68.2
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 6.4e-66 255.0 264 57.6
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 8.3e-66 254.6 187 68.4
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 8.3e-66 254.6 271 53.5
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 2.4e-65 253.1 192 65.6
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 3.2e-65 252.7 192 66.7
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 5.4e-65 251.9 188 69.1
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 7.0e-65 251.5 173 71.7
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 9.2e-65 251.1 188 68.1
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 9.2e-65 251.1 192 66.1
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.2e-64 250.8 210 63.8
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 1.2e-64 250.8 204 64.2
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.6e-64 250.4 192 65.1
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.6e-64 250.4 209 62.2
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 2.0e-64 250.0 195 65.1
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 2.7e-64 249.6 205 62.4
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 3.5e-64 249.2 191 68.1
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 7.8e-64 248.1 192 65.1
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.0e-63 247.7 159 76.1
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.3e-63 247.3 188 66.5
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 1.7e-63 246.9 190 64.7
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 2.3e-63 246.5 193 66.8
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 3.0e-63 246.1 170 70.6
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 3.0e-63 246.1 173 69.4
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.0e-63 245.4 201 62.2
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 6.6e-63 245.0 192 64.6
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 6.6e-63 245.0 188 64.9
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 8.6e-63 244.6 192 64.1
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 8.6e-63 244.6 188 63.3
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.5e-62 243.8 212 61.3
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.5e-62 243.8 161 73.3
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 1.9e-62 243.4 192 64.6
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.9e-62 243.4 188 63.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.5e-62 243.0 206 62.6
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.3e-62 242.7 196 65.3
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 3.3e-62 242.7 173 69.4
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 3.3e-62 242.7 197 63.5
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-62 242.3 193 62.7
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 4.3e-62 242.3 210 60.5
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 4.3e-62 242.3 194 62.9
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 4.3e-62 242.3 191 62.8
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 5.6e-62 241.9 188 63.3
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 9.5e-62 241.1 175 69.1
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 9.5e-62 241.1 161 71.4
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 9.5e-62 241.1 161 71.4
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.6e-61 240.4 196 64.3
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.6e-61 240.4 210 60.5
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 2.1e-61 240.0 208 62.0
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 2.1e-61 240.0 198 61.6
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.8e-61 239.6 212 60.4
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.6e-61 239.2 161 71.4
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 3.6e-61 239.2 206 61.2
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 4.7e-61 238.8 195 63.6
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 6.2e-61 238.4 225 58.7
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 8.1e-61 238.0 204 59.8
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 8.1e-61 238.0 201 59.7
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.1e-60 237.7 212 59.9
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.1e-60 237.7 205 62.0
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-60 237.3 204 59.3
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.8e-60 236.9 207 60.4
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.1e-60 236.1 218 57.8
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 4.0e-60 235.7 195 63.1
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.0e-60 235.7 218 57.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 6.8e-60 235.0 165 72.1
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 8.9e-60 234.6 207 61.4
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 8.9e-60 234.6 188 65.4
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 8.9e-60 234.6 207 60.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-59 234.2 207 60.4
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-59 234.2 207 60.4
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.2e-59 234.2 187 63.1
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.5e-59 233.8 203 62.1
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 2.0e-59 233.4 211 61.6
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 2.0e-59 233.4 198 61.1
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 9.8e-59 231.1 165 69.7
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.7e-58 230.3 203 60.1
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 4.9e-58 228.8 193 61.1
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 6.4e-58 228.4 194 64.9
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 2.4e-57 226.5 163 67.5
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 9.2e-57 224.6 208 58.7
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 1.7e-55 220.3 161 66.5
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 1.1e-54 217.6 140 73.6
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 3.6e-53 212.6 152 69.7
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.7e-53 212.2 206 55.8
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.8e-52 210.3 178 61.8
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 5.2e-52 208.8 156 67.9
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.5e-51 207.2 197 55.3
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 8.4e-50 201.4 157 63.1
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-49 200.3 157 63.1
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.6e-45 186.0 155 60.6
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.6e-45 186.0 155 60.6
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.4e-41 174.1 185 49.2
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 4.2e-41 172.6 192 51.6
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 8.7e-39 164.9 187 47.1
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 2.5e-38 163.3 156 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 3.3e-38 162.9 200 47.0
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.7e-31 140.6 173 46.8
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 1.5e-30 137.5 92 71.7
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 4.3e-30 136.0 156 46.8
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 7.4e-30 135.2 187 40.6
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 9.6e-30 134.8 133 51.1
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 9.6e-30 134.8 173 45.1
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 5.3e-28 129.0 82 74.4
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 3.4e-27 126.3 148 42.6
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 9.9e-27 124.8 85 70.6
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.7e-26 124.0 82 72.0
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 7.9e-24 115.2 87 65.5
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 5.1e-23 112.5 118 51.7
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-22 111.3 121 50.4
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 7.4e-22 108.6 105 57.1
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 1.6e-21 107.5 121 49.6
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 9.0e-20 101.7 137 46.7
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 3.4e-19 99.8 69 66.7
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.6e-16 90.9 92 53.3
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 7.9e-16 88.6 178 38.2
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.9e-12 75.5 85 50.6
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-11 74.3 115 37.4
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 1.7e-10 70.9 92 44.6
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.4e-09 67.8 92 43.5
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.6e-08 64.3 80 51.2
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.8e-07 60.8 159 28.9
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 2.5e-06 57.0 147 29.9
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 4.3e-06 56.2 147 29.3
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 4.3e-06 56.2 147 29.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 5.7e-06 55.8 147 29.9
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 9.7e-06 55.1 148 30.4


User provided reference genes

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