Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00786 Erythranthe guttata HOM05D000002 ORTHO05D000047 1.3e-84 316.2 152 100.0
MD14G1033400 Malus domestica HOM05D000002 ORTHO05D000047 2.1e-45 186.0 169 55.6
Migut.K01133 Erythranthe guttata HOM05D000002 ORTHO05D000047 3.6e-45 185.3 162 59.9
TWI31G1243 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 3.9e-44 181.8 169 53.8
TWI34G1144 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 5.2e-44 181.4 169 53.8
Migut.K01227 Erythranthe guttata HOM05D000002 ORTHO05D000047 2.0e-43 179.5 145 62.1
RcHm_v2.0_Chr7g0188861 Rosa chinensis HOM05D000002 ORTHO05D000001 3.3e-43 178.7 169 53.8
TWI63G0245 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 2.2e-42 176.0 169 53.3
TWI74G0113 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 2.2e-42 176.0 169 53.3
RcHm_v2.0_Chr4g0394021 Rosa chinensis HOM05D000002 ORTHO05D000047 3.7e-42 175.3 169 53.3
TWI79G1645 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 4.8e-42 174.9 169 52.7
Migut.C00077 Erythranthe guttata HOM05D000002 ORTHO05D000047 1.4e-41 173.3 168 55.4
MD07G1078600 Malus domestica HOM05D000002 ORTHO05D000047 4.1e-41 171.8 169 50.3
RcHm_v2.0_Chr3g0453341 Rosa chinensis HOM05D000002 ORTHO05D000047 9.1e-41 170.6 169 52.1
RcHm_v2.0_Chr1g0365941 Rosa chinensis HOM05D000002 ORTHO05D000047 1.2e-40 170.2 169 52.1
RcHm_v2.0_Chr4g0388371 Rosa chinensis HOM05D000002 ORTHO05D000047 2.0e-40 169.5 169 47.9
MD10G1307000 Malus domestica HOM05D000002 ORTHO05D000001 2.6e-40 169.1 168 53.6
TWI36G0078 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 5.5e-38 161.4 168 51.2
MD01G1096500 Malus domestica HOM05D000002 ORTHO05D000001 6.7e-36 154.5 169 47.3
MD11G1107300 Malus domestica HOM05D000002 ORTHO05D000001 6.7e-36 154.5 169 47.3
MD10G1333400 Malus domestica HOM05D000002 ORTHO05D000047 1.3e-34 150.2 168 45.2
RcHm_v2.0_Chr1g0322851 Rosa chinensis HOM05D000002 ORTHO05D000047 2.8e-34 149.1 169 46.2
MD08G1209000 Malus domestica HOM05D000103 ORTHO05D000049 4.8e-34 148.3 168 44.6
MD15G1053300 Malus domestica HOM05D000002 ORTHO05D000047 4.8e-34 148.3 168 44.6
RcHm_v2.0_Chr2g0156071 Rosa chinensis HOM05D000002 ORTHO05D000001 6.3e-34 147.9 169 45.6
RcHm_v2.0_Chr7g0192331 Rosa chinensis HOM05D000002 ORTHO05D000047 6.3e-34 147.9 169 45.6
MD10G1237700 Malus domestica HOM05D000002 ORTHO05D000047 5.9e-32 141.4 169 43.2
FvH4_2g17331 Fragaria vesca HOM05D000002 ORTHO05D000047 7.5e-27 124.4 122 47.5
SEGI_33603 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.3e-26 123.6 181 38.1
SEGI_10748 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.8e-26 121.7 181 38.7
SEGI_03840 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 8.3e-26 120.9 181 38.1
SEGI_17012 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.1e-25 120.6 181 37.6
PSO782G0209 Papaver somniferum HOM05D000002 ORTHO05D000047 3.1e-25 119.0 171 37.4
SEGI_28989 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.1e-25 118.6 158 41.1
SEGI_41209 Sequoiadendron giganteum HOM05D001800 ORTHO05D000047 7.0e-25 117.9 181 37.0
Rhsim06G0127400 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.3e-23 113.6 132 43.9
Migut.C00279 Erythranthe guttata HOM05D010399 ORTHO05D000047 6.5e-23 111.3 75 73.3
PSO675G4970 Papaver somniferum HOM05D000002 ORTHO05D000047 9.5e-22 107.5 132 41.7
SEGI_27629 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.6e-21 106.7 136 42.6
PSO384G1714 Papaver somniferum HOM05D000002 ORTHO05D000047 4.7e-21 105.1 132 41.7
PSO732G0713 Papaver somniferum HOM05D000002 ORTHO05D000047 1.0e-20 104.0 132 40.9
Rhsim08G0117000 Rhododendron simsii HOM05D002269 ORTHO05D002421 1.0e-20 104.0 134 41.8
Ciclev10013723m.g Citrus clementina HOM05D000002 ORTHO05D000047 3.0e-20 102.4 176 34.7
TWI34G0134 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 5.2e-20 101.7 75 60.0
TWI38G0937 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 7.5e-19 97.8 152 39.5
PSO339G4703 Papaver somniferum HOM05D000002 ORTHO05D000001 9.2e-17 90.9 158 33.5
TWI38G0479 Tripterygium wilfordii HOM05D000002 ORTHO05D018019 9.2e-17 90.9 75 60.0
Rhsim08G0201600 Rhododendron simsii HOM05D000002 ORTHO05D000047 2.0e-16 89.7 153 34.0
TWI23G0326 Tripterygium wilfordii HOM05D000002 ORTHO05D018019 3.5e-16 89.0 75 58.7
PSO717G0013 Papaver somniferum HOM05D000002 ORTHO05D000001 2.3e-15 86.3 115 39.1
Rhsim08G0202000 Rhododendron simsii HOM05D001266 ORTHO05D000047 2.9e-15 85.9 116 39.7
RcHm_v2.0_Chr6g0261731 Rosa chinensis HOM05D000002 ORTHO05D000047 6.6e-15 84.7 68 55.9
Eucgr.K01677 Eucalyptus grandis HOM05D000886 ORTHO05D000525 1.1e-14 84.0 174 31.0
Prupe.3G136000 Prunus persica HOM05D000002 ORTHO05D000047 1.6e-13 80.1 73 47.9
TWI36G0427 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.6e-13 80.1 137 36.5
SEGI_41565 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.7e-13 78.6 138 37.0
BolC9t55730H Brassica oleracea HOM05D000005 ORTHO05D010542 8.0e-13 77.8 126 32.5
MD06G1120600 Malus domestica HOM05D000002 ORTHO05D000001 8.0e-13 77.8 74 45.9
THA.LOC104817097 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 1.0e-12 77.4 126 32.5
THA.LOC104824963 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 1.8e-12 76.6 126 32.5
PSO063G5806 Papaver somniferum HOM05D000002 ORTHO05D000001 2.3e-12 76.3 115 38.3
THA.LOC104806366 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 2.3e-12 76.3 126 31.0
THA.LOC109116892 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.0e-12 75.9 126 34.1
PSO013G0298 Papaver somniferum HOM05D000002 ORTHO05D000001 5.7e-11 71.6 115 36.5
THA.LOC104814748 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 1.3e-10 70.5 159 27.7
BolC1t04459H Brassica oleracea HOM05D009189 ORTHO05D010542 1.7e-10 70.1 122 30.3
THA.LOC104809686 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 2.9e-10 69.3 126 30.2
THA.LOC104801619 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 4.9e-10 68.6 126 30.2
Ciclev10010244m.g Citrus clementina HOM05D000002 ORTHO05D000047 8.3e-10 67.8 127 30.7
BolC4t25931H Brassica oleracea HOM05D009189 ORTHO05D010542 1.1e-09 67.4 122 29.5
THA.LOC104824674 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 4.1e-09 65.5 124 29.8
THA.LOC104824675 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 4.1e-09 65.5 124 29.8
RcHm_v2.0_Chr5g0064121 Rosa chinensis HOM05D000002 ORTHO05D000001 5.4e-09 65.1 75 44.0
Rhsim04G0123900 Rhododendron simsii HOM05D000182 ORTHO05D000112 2.7e-08 62.8 143 29.4
THA.LOC104825269 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 3.5e-08 62.4 126 30.2
BNapus_Darmor_BZH_scaffold_51p00020 Brassica napus HOM05D009189 ORTHO05D010542 5.9e-08 61.6 75 33.3
BraSC28t45952Z Brassica rapa HOM05D009189 ORTHO05D010542 5.9e-08 61.6 75 33.3
THA.LOC104810413 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 5.9e-08 61.6 155 26.5
THA.LOC104812632 Tarenaya hassleriana HOM05D009189 ORTHO05D010542 5.9e-08 61.6 117 29.1
Ciclev10006653m.g Citrus clementina HOM05D000002 ORTHO05D000047 7.8e-08 61.2 83 39.8
Rhsim01G0085300 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.0e-07 60.8 147 27.9
COL.COLO4_38534 Corchorus olitorius HOM05D000002 ORTHO05D000047 3.0e-07 59.3 126 33.3
RhsimUnG0237200 Rhododendron simsii HOM05D000002 ORTHO05D013260 3.0e-07 59.3 143 28.7
Rhsim02G0139900 Rhododendron simsii HOM05D010463 ORTHO05D013260 6.6e-07 58.2 171 26.3
VMungo0720G1249 Vigna mungo HOM05D000002 ORTHO05D000047 6.6e-07 58.2 180 23.9
BNapus_Darmor_BZH_scaffold_69p00010 Brassica napus HOM05D000002 ORTHO05D000001 1.1e-06 57.4 71 32.4
ClCG10G009560 Citrullus lanatus HOM05D000002 ORTHO05D000001 1.5e-06 57.0 172 20.9
PSO478G1246 Papaver somniferum HOM05D000002 ORTHO05D000001 1.9e-06 56.6 70 42.9
THA.LOC109116574 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 3.3e-06 55.8 131 26.0
BraA05t21111Z Brassica rapa HOM05D009189 ORTHO05D010542 4.3e-06 55.5 76 31.6
Cpa.g.sc67.4 Carica papaya HOM05D000002 ORTHO05D000047 4.3e-06 55.5 168 25.6
THA.LOC104824676 Tarenaya hassleriana HOM05D009189 ORTHO05D010542 4.3e-06 55.5 131 26.0
FvH4_4g14243 Fragaria vesca HOM05D000002 ORTHO05D000047 5.6e-06 55.1 117 29.1
THA.LOC109116756 Tarenaya hassleriana HOM05D000002 ORTHO05D010542 5.6e-06 55.1 124 28.2
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 9.5e-06 54.3 120 25.0
PGR004G2026 Punica granatum HOM05D000002 ORTHO05D000047 9.5e-06 54.3 147 27.9
THA.LOC109116981 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.5e-06 54.3 103 28.2
vmacro15092 Vaccinium macrocarpon HOM05D005784 ORTHO05D007803 9.5e-06 54.3 125 28.0


User provided reference genes

Program Settings