Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.2e-80 301.2 142 100.0
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.0e-75 284.6 143 95.8
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.7e-71 271.9 143 90.9
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.5e-40 169.1 140 63.6
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.6e-39 166.4 142 63.4
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.6e-39 166.4 142 63.4
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 9.4e-32 140.6 145 57.2
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 3.7e-20 102.1 146 43.8
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 2.7e-18 95.9 154 37.7
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.0e-17 94.0 92 57.6
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.3e-17 93.6 147 39.5
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.7e-17 93.2 154 38.3
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 5.0e-17 91.7 155 40.6
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.5e-17 91.3 155 40.6
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 8.6e-17 90.9 145 40.0
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.5e-16 90.1 151 37.1
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.5e-16 90.1 151 37.1
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-16 89.7 147 38.1
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.5e-16 89.4 147 36.7
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 4.2e-16 88.6 159 40.3
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-15 86.7 141 40.4
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.1e-15 86.3 151 33.8
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 2.1e-15 86.3 151 33.8
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 2.8e-15 85.9 142 43.0
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 2.8e-15 85.9 142 43.0
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 2.8e-15 85.9 142 43.0
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.6e-15 85.5 149 36.9
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.6e-15 85.5 155 38.7
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 6.1e-15 84.7 150 38.0
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 6.1e-15 84.7 76 50.0
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 6.1e-15 84.7 148 39.9
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.1e-15 84.7 121 41.3
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 8.0e-15 84.3 151 37.1
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 8.0e-15 84.3 147 40.1
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.4e-14 83.6 119 39.5
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.4e-14 83.6 57 64.9
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.4e-14 83.6 80 50.0
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 1.8e-14 83.2 146 34.9
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.8e-14 83.2 65 56.9
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 1.8e-14 83.2 110 45.5
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.8e-14 83.2 138 39.9
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.3e-14 82.8 147 40.8
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.3e-14 82.8 148 35.8
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.3e-14 82.8 149 38.3
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 2.3e-14 82.8 37 89.2
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 3.0e-14 82.4 150 36.7
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 3.0e-14 82.4 134 36.6
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.0e-14 82.4 152 36.2
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.0e-14 82.0 149 35.6
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 4.0e-14 82.0 148 41.9
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.0e-14 82.0 58 60.3
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 4.0e-14 82.0 78 50.0
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 4.0e-14 82.0 66 57.6
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 5.2e-14 81.6 148 37.8
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 5.2e-14 81.6 147 37.4
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 5.2e-14 81.6 67 53.7
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 5.2e-14 81.6 65 53.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 5.2e-14 81.6 63 58.7
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 6.8e-14 81.3 136 39.0
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 6.8e-14 81.3 148 35.8
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.8e-14 81.3 56 64.3
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 8.9e-14 80.9 145 35.2
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 8.9e-14 80.9 142 39.4
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 8.9e-14 80.9 65 55.4
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.9e-14 80.9 147 41.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.9e-14 80.9 122 36.1
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 1.2e-13 80.5 139 37.4
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.5e-13 80.1 77 45.5
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.5e-13 80.1 149 36.9
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.5e-13 80.1 105 45.7
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.5e-13 80.1 69 53.6
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.5e-13 80.1 67 53.7
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-13 80.1 77 50.6
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.5e-13 80.1 56 62.5
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 2.0e-13 79.7 144 38.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.0e-13 79.7 159 37.7
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.0e-13 79.7 79 51.9
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 2.0e-13 79.7 78 51.3
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.6e-13 79.3 91 49.5
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.6e-13 79.3 35 88.6
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.6e-13 79.3 35 88.6
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.6e-13 79.3 138 39.1
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 2.6e-13 79.3 77 44.2
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 3.4e-13 79.0 63 52.4
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 3.4e-13 79.0 35 85.7
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 3.4e-13 79.0 35 85.7
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.4e-13 78.6 145 36.6
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 4.4e-13 78.6 143 38.5
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 4.4e-13 78.6 60 60.0
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 4.4e-13 78.6 141 39.0
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.4e-13 78.6 141 39.0
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 4.4e-13 78.6 68 54.4
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 5.7e-13 78.2 36 83.3
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.7e-13 78.2 73 53.4
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.7e-13 78.2 73 53.4
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.7e-13 78.2 73 53.4
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 5.7e-13 78.2 83 49.4
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 5.7e-13 78.2 162 36.4
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 7.5e-13 77.8 151 36.4
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 7.5e-13 77.8 151 36.4
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.8e-13 77.4 149 34.9
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.8e-13 77.4 37 81.1
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.3e-12 77.0 64 54.7
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.3e-12 77.0 119 37.8
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.7e-12 76.6 144 38.2
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.7e-12 76.6 76 44.7
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.7e-12 76.6 134 40.3
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 2.2e-12 76.3 51 62.7
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.8e-12 75.9 63 54.0
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.8e-12 75.9 63 54.0
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.7e-12 75.5 71 50.7
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 3.7e-12 75.5 63 52.4
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.9e-12 75.1 88 44.3
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 4.9e-12 75.1 37 78.4
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.9e-12 75.1 58 55.2
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.1e-11 73.9 41 70.7
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 1.4e-11 73.6 69 46.4
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 9.2e-11 70.9 79 49.4
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.6e-10 70.1 62 53.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.6e-10 70.1 60 55.0
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.7e-10 69.3 50 58.0
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 2.7e-10 69.3 64 51.6
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 7.8e-10 67.8 35 77.1
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 1.0e-09 67.4 54 55.6
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.7e-09 66.6 37 73.0
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 2.3e-09 66.2 94 42.6
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.8e-09 65.5 35 71.4
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 5.0e-09 65.1 34 70.6
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 6.6e-09 64.7 59 52.5
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 8.6e-09 64.3 86 39.5
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 2.5e-08 62.8 36 72.2
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 4.3e-08 62.0 35 65.7
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 9.5e-08 60.8 63 44.4
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 1.2e-07 60.5 37 59.5
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.6e-07 60.1 36 61.1
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.8e-07 59.3 35 68.6
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 8.0e-07 57.8 139 34.5
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.0e-06 57.4 128 35.9
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.0e-06 57.4 128 35.9
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.3e-06 56.2 114 36.0
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.3e-06 56.2 118 34.7
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 3.0e-06 55.8 59 50.8
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.0e-06 55.8 127 33.9
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 8.9e-06 54.3 39 59.0


User provided reference genes

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