Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00568 Erythranthe guttata HOM05D000926 ORTHO05D000707 2.5e-42 175.3 103 100.0
SalBow1G7500 Salvia bowleyana HOM05D000926 ORTHO05D000707 2.2e-22 109.0 110 54.5
MSTRG.2960 Avicennia marina HOM05D000926 ORTHO05D000707 4.9e-22 107.8 110 56.4
SGA_v2.0_scaffold4G02343 Striga asiatica HOM05D000926 ORTHO05D000707 1.1e-16 90.1 92 60.9
CAN.G497.36 Capsicum annuum HOM05D000926 ORTHO05D000707 3.2e-13 78.6 90 44.4
CAN.G93.43 Capsicum annuum HOM05D000926 ORTHO05D000707 9.3e-13 77.0 89 49.4
Sabra17G0090100 Salix brachista HOM05D000926 ORTHO05D000707 3.5e-12 75.1 86 46.5
Sopen02g034200 Solanum pennellii HOM05D000926 ORTHO05D000707 3.5e-12 75.1 95 43.2
Potri.017G107300 Populus trichocarpa HOM05D000926 ORTHO05D000707 4.6e-12 74.7 89 44.9
Lj1g0009060 Lotus japonicus HOM05D000926 ORTHO05D000707 1.0e-11 73.6 99 42.4
Solyc02g089460.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 1.3e-11 73.2 85 43.5
PGSC0003DMG400001477 Solanum tuberosum HOM05D000926 ORTHO05D000707 1.7e-11 72.8 95 44.2
CiPaw.03G080100 Carya illinoinensis HOM05D000926 ORTHO05D000707 3.0e-11 72.0 100 45.0
Duzib138G1671 Durio zibethinus HOM05D000926 ORTHO05D000707 3.0e-11 72.0 95 44.2
Nitab4.5_0002171g0020 Nicotiana tabacum HOM05D000926 ORTHO05D000707 3.0e-11 72.0 85 40.0
Thecc.04G113000 Theobroma cacao HOM05D000926 ORTHO05D000707 3.9e-11 71.6 96 43.8
Gohir.A07G178200 Gossypium hirsutum HOM05D000926 ORTHO05D000707 5.1e-11 71.2 92 39.1
Gohir.D07G185000 Gossypium hirsutum HOM05D000926 ORTHO05D000707 6.6e-11 70.9 92 40.2
Gorai.001G205500 Gossypium raimondii HOM05D000926 ORTHO05D000707 6.6e-11 70.9 92 40.2
Manes.01G105900 Manihot esculenta HOM05D000926 ORTHO05D000707 8.7e-11 70.5 97 42.3
Phvul.008G023400 Phaseolus vulgaris HOM05D000926 ORTHO05D000707 8.7e-11 70.5 93 44.1
Cfa007731 Carpinus fangiana HOM05D000926 ORTHO05D000707 1.1e-10 70.1 79 48.1
CiPaw.03G080200 Carya illinoinensis HOM05D000926 ORTHO05D000707 1.1e-10 70.1 89 46.1
Haze_14349 Corylus avellana HOM05D000926 ORTHO05D000707 1.1e-10 70.1 92 43.5
Sc10g0000430 Simmondsia chinensis HOM05D000926 ORTHO05D000707 1.5e-10 69.7 78 47.4
Nitab4.5_0005612g0030 Nicotiana tabacum HOM05D000926 ORTHO05D000707 1.9e-10 69.3 85 41.2
Oeu032853.1 Olea europaea HOM05D000926 ORTHO05D000707 1.9e-10 69.3 84 42.9
Glyma.18G277600 Glycine max HOM05D000926 ORTHO05D000707 3.3e-10 68.6 102 43.1
Lalb_Chr10g0092481 Lupinus albus HOM05D000926 ORTHO05D000707 3.3e-10 68.6 93 44.1
TAR629G1973 Trochodendron aralioides HOM05D000926 ORTHO05D000707 3.3e-10 68.6 95 46.3
Dinv34883 Davidia involucrata HOM05D000926 ORTHO05D000707 7.3e-10 67.4 81 45.7
Potri.004G108440 Populus trichocarpa HOM05D000926 ORTHO05D000707 7.3e-10 67.4 83 45.8
THA.LOC109116337 Tarenaya hassleriana HOM05D000926 ORTHO05D000707 9.6e-10 67.0 101 38.6
Atru.chr2.1223 Acer truncatum HOM05D000926 ORTHO05D000707 1.3e-09 66.6 89 41.6
FAN05G2979 Fragaria x ananassa HOM05D000926 ORTHO05D000707 1.3e-09 66.6 102 41.2
Manes.02G062400 Manihot esculenta HOM05D000926 ORTHO05D000707 1.3e-09 66.6 80 45.0
Manes.02G062600 Manihot esculenta HOM05D000926 ORTHO05D000707 1.3e-09 66.6 83 44.6
Prupe.3G245400 Prunus persica HOM05D000926 ORTHO05D000707 1.3e-09 66.6 102 45.1
TAR374G1048 Trochodendron aralioides HOM05D000926 ORTHO05D000707 1.6e-09 66.2 95 43.2
MBI15_g03197_MAGBIO Magnolia biondii HOM05D000926 ORTHO05D000707 2.1e-09 65.9 86 41.9
Oeu049341.1 Olea europaea HOM05D000926 ORTHO05D000707 2.1e-09 65.9 80 45.0
Potri.017G107200 Populus trichocarpa HOM05D000926 ORTHO05D000707 2.8e-09 65.5 86 43.0
Aqoxy3G00596 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 3.6e-09 65.1 82 43.9
AUR62023120 Chenopodium quinoa HOM05D000926 ORTHO05D000707 3.6e-09 65.1 90 42.2
Sc11g0008980 Simmondsia chinensis HOM05D000926 ORTHO05D000707 3.6e-09 65.1 97 38.1
GSVIVG01036505001 Vitis vinifera HOM05D000926 ORTHO05D000707 3.6e-09 65.1 86 41.9
Eucgr.J01438 Eucalyptus grandis HOM05D000926 ORTHO05D000707 4.8e-09 64.7 87 44.8
Duzib133G0632 Durio zibethinus HOM05D000926 ORTHO05D000707 6.2e-09 64.3 74 51.4
FvH4_6g45911 Fragaria vesca HOM05D000926 ORTHO05D000707 6.2e-09 64.3 92 40.2
Potri.017G107400 Populus trichocarpa HOM05D000926 ORTHO05D000707 6.2e-09 64.3 83 43.4
Sabra04G0073900 Salix brachista HOM05D000926 ORTHO05D000707 6.2e-09 64.3 100 40.0
BcaC06g33728 Brassica carinata HOM05D015998 ORTHO05D000707 8.1e-09 63.9 105 37.1
Cpa.g.sc70.7 Carica papaya HOM05D000926 ORTHO05D000707 8.1e-09 63.9 82 45.1
Cfa007730 Carpinus fangiana HOM05D000926 ORTHO05D000707 8.1e-09 63.9 90 42.2
Eucgr.J01437 Eucalyptus grandis HOM05D000926 ORTHO05D000707 8.1e-09 63.9 86 41.9
MD17G1069100 Malus domestica HOM05D000926 ORTHO05D000707 8.1e-09 63.9 102 44.1
EL10Ac2g04399 Beta vulgaris HOM05D000926 ORTHO05D000707 1.1e-08 63.5 82 51.2
EL10Ac2g04400 Beta vulgaris HOM05D000926 ORTHO05D000707 1.1e-08 63.5 92 43.5
Glyma.08G254800 Glycine max HOM05D000926 ORTHO05D000707 1.1e-08 63.5 93 40.9
Hma1.2p1_0588F.1_g184540 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 1.1e-08 63.5 96 41.7
Psat3g193960 Pisum sativum HOM05D000926 ORTHO05D000707 1.1e-08 63.5 99 37.4
TPR.G3253 Trifolium pratense HOM05D000926 ORTHO05D000707 1.1e-08 63.5 88 38.6
Medtr0542s0020 Medicago truncatula HOM05D000926 ORTHO05D000707 1.4e-08 63.2 111 36.9
PGR042G1069 Punica granatum HOM05D000926 ORTHO05D000707 1.4e-08 63.2 80 52.5
Rhsim08G0078900 Rhododendron simsii HOM05D000926 ORTHO05D000707 1.4e-08 63.2 100 44.0
CAN.G497.35 Capsicum annuum HOM05D000926 ORTHO05D000707 2.4e-08 62.4 82 34.1
ClCG07G016190 Citrullus lanatus HOM05D000926 ORTHO05D000707 2.4e-08 62.4 92 40.2
Ciclev10013138m.g Citrus clementina HOM05D000926 ORTHO05D000707 2.4e-08 62.4 82 46.3
FAN05G2016 Fragaria x ananassa HOM05D000926 ORTHO05D000707 2.4e-08 62.4 92 39.1
MD09G1078800 Malus domestica HOM05D000926 ORTHO05D000707 2.4e-08 62.4 88 46.6
Actinidia26283 Actinidia chinensis HOM05D000926 ORTHO05D000707 4.0e-08 61.6 92 41.3
AUR62009442 Chenopodium quinoa HOM05D000926 ORTHO05D000368 4.0e-08 61.6 90 42.2
RcHm_v2.0_Chr2g0164161 Rosa chinensis HOM05D000926 ORTHO05D000707 5.3e-08 61.2 99 44.4
Cfa007729 Carpinus fangiana HOM05D000926 ORTHO05D000707 6.9e-08 60.8 91 41.8
Hma1.2p1_0588F.1_g184550 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 6.9e-08 60.8 80 41.2
Manes.01G106100 Manihot esculenta HOM05D000926 ORTHO05D000707 6.9e-08 60.8 89 41.6
Nn3g17603 Nelumbo nucifera HOM05D000926 ORTHO05D000707 6.9e-08 60.8 92 37.0
Potri.004G108680 Populus trichocarpa HOM05D000926 ORTHO05D000707 6.9e-08 60.8 86 40.7
PGR004G2735 Punica granatum HOM05D000926 ORTHO05D000707 6.9e-08 60.8 93 38.7
SalBow1G1348 Salvia bowleyana HOM05D000926 ORTHO05D000707 6.9e-08 60.8 82 45.1
PGSC0003DMG400001478 Solanum tuberosum HOM05D000926 ORTHO05D000707 6.9e-08 60.8 100 35.0
A06p39650 Brassica napus HOM05D000926 ORTHO05D000707 9.0e-08 60.5 100 38.0
BraA06t26880Z Brassica rapa HOM05D000926 ORTHO05D000707 9.0e-08 60.5 100 38.0
Gohir.D07G082340 Gossypium hirsutum HOM05D000926 ORTHO05D000707 9.0e-08 60.5 97 49.5
Gorai.001G087900 Gossypium raimondii HOM05D000926 ORTHO05D000707 9.0e-08 60.5 97 49.5
QL02p063891 Quercus lobata HOM05D000926 ORTHO05D000707 9.0e-08 60.5 95 42.1
Ah.10g038420 Amaranthus hybridus HOM05D000926 ORTHO05D000707 1.2e-07 60.1 78 55.1
BcaC06g30841 Brassica carinata HOM05D000926 ORTHO05D000707 1.2e-07 60.1 83 41.0
Eucgr.J01435 Eucalyptus grandis HOM05D000926 ORTHO05D000707 1.2e-07 60.1 86 39.5
Glyma.19G038700 Glycine max HOM05D000926 ORTHO05D000707 1.2e-07 60.1 93 38.7
arahy.Tifrunner.gnm1.ann1.DUC516 Arachis hypogaea HOM05D000926 ORTHO05D000707 1.5e-07 59.7 108 33.3
Eucgr.J01436 Eucalyptus grandis HOM05D000926 ORTHO05D000707 1.5e-07 59.7 86 39.5
Lsat_1_v5_gn_4_174621 Lactuca sativa HOM05D000926 ORTHO05D000707 1.5e-07 59.7 91 38.5
Sabra17G0090200 Salix brachista HOM05D000926 ORTHO05D000707 1.5e-07 59.7 85 44.7
AUR62023127 Chenopodium quinoa HOM05D000926 ORTHO05D000707 2.0e-07 59.3 91 37.4
Duzib211G0100 Durio zibethinus HOM05D000926 ORTHO05D000707 2.0e-07 59.3 81 42.0
ECA232G3566 Erigeron canadensis HOM05D000926 ORTHO05D000707 2.0e-07 59.3 104 36.5
Lsat_1_v5_gn_3_95661 Lactuca sativa HOM05D000926 ORTHO05D000707 2.0e-07 59.3 85 40.0
Lju361C12T10 Lonicera japonica HOM05D000926 ORTHO05D000707 2.0e-07 59.3 80 53.8
AL5G20390 Arabidopsis lyrata HOM05D000926 ORTHO05D000707 2.6e-07 58.9 82 43.9
Cc07_g04740 Coffea canephora HOM05D000926 ORTHO05D000707 2.6e-07 58.9 89 48.3
Lalb_Chr10g0092471 Lupinus albus HOM05D000926 ORTHO05D000707 2.6e-07 58.9 97 38.1
Lalb_Chr21g0318771 Lupinus albus HOM05D000926 ORTHO05D000707 2.6e-07 58.9 88 39.8
Nitab4.5_0001110g0150 Nicotiana tabacum HOM05D000926 ORTHO05D000707 2.6e-07 58.9 97 43.3
QL02p063866 Quercus lobata HOM05D000926 ORTHO05D000707 2.6e-07 58.9 91 47.3
CSS0045695 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 3.4e-07 58.5 89 33.7
AUR62023119 Chenopodium quinoa HOM05D000926 ORTHO05D000707 3.4e-07 58.5 79 40.5
Dinv38621 Davidia involucrata HOM05D000926 ORTHO05D000707 3.4e-07 58.5 86 40.7
ECA238G4493 Erigeron canadensis HOM05D000926 ORTHO05D000707 3.4e-07 58.5 86 41.9
HanXRQChr09g0263271 Helianthus annuus HOM05D000926 ORTHO05D000707 3.4e-07 58.5 98 40.8
HanXRQChr09g0263311 Helianthus annuus HOM05D000926 ORTHO05D000707 3.4e-07 58.5 91 39.6
Nitab4.5_0013205g0010 Nicotiana tabacum HOM05D000926 ORTHO05D000707 3.4e-07 58.5 102 42.2
Sp2g18220 Schrenkiella parvula HOM05D000926 ORTHO05D000707 3.4e-07 58.5 80 40.0
Ah.16g100760 Amaranthus hybridus HOM05D000926 ORTHO05D000707 4.5e-07 58.2 85 47.1
Ah.16g100770 Amaranthus hybridus HOM05D000926 ORTHO05D000707 4.5e-07 58.2 94 36.2
ClCG06G015310 Citrullus lanatus HOM05D000926 ORTHO05D000707 4.5e-07 58.2 83 33.7
arahy.Tifrunner.gnm1.ann1.HG26LZ Arachis hypogaea HOM05D000926 ORTHO05D000707 5.8e-07 57.8 111 43.2
AUR62009441 Chenopodium quinoa HOM05D000926 ORTHO05D000707 5.8e-07 57.8 80 40.0
MELO3C018927.2 Cucumis melo HOM05D000926 ORTHO05D000707 5.8e-07 57.8 100 39.0
DCAR_002021 Daucus carota HOM05D000926 ORTHO05D000707 5.8e-07 57.8 85 40.0
Sabra04G0074000 Salix brachista HOM05D000926 ORTHO05D000707 5.8e-07 57.8 94 40.4
MSTRG.2959 Avicennia marina HOM05D000926 ORTHO05D000707 7.6e-07 57.4 78 41.0
Carub.0009s0001 Capsella rubella HOM05D000926 ORTHO05D000707 7.6e-07 57.4 85 43.5
CiPaw.03G077200 Carya illinoinensis HOM05D000926 ORTHO05D000707 7.6e-07 57.4 100 38.0
Manes.05G115600 Manihot esculenta HOM05D000926 ORTHO05D000707 7.6e-07 57.4 84 42.9
Thhalv10005496m.g Eutrema salsugineum HOM05D000926 ORTHO05D000707 9.9e-07 57.0 83 44.6
Potri.017G107100 Populus trichocarpa HOM05D000926 ORTHO05D000707 9.9e-07 57.0 85 40.0
Thecc.04G112900 Theobroma cacao HOM05D000926 ORTHO05D000707 9.9e-07 57.0 86 37.2
ATR0691G108 Amborella trichopoda HOM05D000926 ORTHO05D000707 1.3e-06 56.6 77 40.3
Sopen02g034210 Solanum pennellii HOM05D000926 ORTHO05D000707 1.3e-06 56.6 100 40.0
CSS0017323 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 1.7e-06 56.2 80 47.5
CiPaw.03G080300 Carya illinoinensis HOM05D000926 ORTHO05D000707 1.7e-06 56.2 83 39.8
MELO3C018921.2 Cucumis melo HOM05D000926 ORTHO05D000707 1.7e-06 56.2 89 38.2
Potri.004G108800 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.7e-06 56.2 79 41.8
Prupe.3G245300 Prunus persica HOM05D000926 ORTHO05D000707 1.7e-06 56.2 84 47.6
RcHm_v2.0_Chr2g0164101 Rosa chinensis HOM05D000926 ORTHO05D000707 1.7e-06 56.2 99 38.4
RcHm_v2.0_Chr2g0164151 Rosa chinensis HOM05D000926 ORTHO05D000707 2.2e-06 55.8 103 38.8
Ah.10g038410 Amaranthus hybridus HOM05D000926 ORTHO05D000707 2.9e-06 55.5 87 35.6
Aqoxy7G02467 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 2.9e-06 55.5 91 41.8
DCAR_026290 Daucus carota HOM05D000926 ORTHO05D000707 2.9e-06 55.5 92 39.1
Solyc02g089450.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 2.9e-06 55.5 91 37.4
DCAR_007536 Daucus carota HOM05D000926 ORTHO05D000707 3.8e-06 55.1 77 46.8
DCAR_007538 Daucus carota HOM05D000926 ORTHO05D000707 3.8e-06 55.1 77 46.8
Migut.K00874 Erythranthe guttata HOM05D000926 ORTHO05D000707 3.8e-06 55.1 79 48.1
Hma1.2p1_2231F.1_g317580 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 3.8e-06 55.1 81 39.5
MD09G1078900 Malus domestica HOM05D000926 ORTHO05D000707 3.8e-06 55.1 81 45.7
HPP92_005300 Vanilla planifolia HOM05D000926 ORTHO05D000707 3.8e-06 55.1 87 37.9
Aqoxy3G00594 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 4.9e-06 54.7 87 39.1
DCAR_010990 Daucus carota HOM05D000926 ORTHO05D000707 4.9e-06 54.7 78 41.0
HanXRQChr14g0439481 Helianthus annuus HOM05D000926 ORTHO05D000707 4.9e-06 54.7 92 37.0
Sabra04G0073800 Salix brachista HOM05D000926 ORTHO05D000707 4.9e-06 54.7 79 38.0
ECA232G0239 Erigeron canadensis HOM05D000926 ORTHO05D000707 6.4e-06 54.3 90 35.6
Lj1g0010988 Lotus japonicus HOM05D000926 ORTHO05D000707 6.4e-06 54.3 80 47.5
SalBow1G1369 Salvia bowleyana HOM05D000926 ORTHO05D000707 6.4e-06 54.3 81 44.4
MELO3C022064.2 Cucumis melo HOM05D000926 ORTHO05D000707 8.4e-06 53.9 76 40.8
CsaV3_1G003190 Cucumis sativus L. HOM05D000926 ORTHO05D000707 8.4e-06 53.9 83 34.9
DCAR_002020 Daucus carota HOM05D000926 ORTHO05D000707 8.4e-06 53.9 95 41.1
Sed0015600 Sechium edule HOM05D000926 ORTHO05D000707 8.4e-06 53.9 80 33.8


User provided reference genes

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